Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1376 ACTCAATTATTGGACAGTGGTAATAAGAAGGTGAGAGGGAATATTGAAGAAAAAGGAGATGACAAAGATGAGGAGAAGGAAGAGTTTAATATGGGAATAGCAACACCACCACCACTTCCAAGTATCATTCTCTCTCATTCAAAGACACAGCCAGGTGAATCTTGTTCCAATTCCATGTCACAAGATTATCAACAAGGAATCTTCACCTTCTCCAATGGGTTCCAGAGAACCACAGTAACTCATCAAGATCAGCAGCAGGAGCATCAGATCCGGAGGGACAAGGTGAGGTTGCAACAAGGCTTCGAACCACCGCCACAGCCACCACCACCATTAGTTGGGATAGAAGAAGAACCAGGAGGGATCCCGGTTTACGAACCAGCAGGGATGCTGTCAGAGATGTTTAATTTCCCACATGCCGGCGACACTGCCGCTGAATTGTTGGAACAACAGCAGCAGCAGATGACGGCGACGTTTCGGTCCTCGGGGCCTCAACCAGTGACCAGTGGTAGCGAGTGGTACGGAAGAAGACAAGGGATAATAACTGGGTTGGGACCGTTGGGAGATTCAACAAAGAATCATCATCATCATCAAAACGACAACAACTACAACCATCATCATCATTCTCAGATTTCAAGCATTAATGCAGCAGACTCAGCTGCTGCTCATCAAGCCATGCAACTTTTTCTTATGAACCCTCAAACAAGATCTCCTTCCCCTCCTCCTCCAAACTCTTCATCTTCCACACTTCACATGCTACTTCCCAATCCTTCTTCTAATAACCCCCTTCAAGGCTTTGCTACAAGTTCAACTGCTGGTGGGTCTTATGGTCAATTCACATGGGTTCCTGATCATAGCACTGAAGAAGGAGGCAATAATGGTGGCGTTGTGGAAGGTCAAGGTCTATCATTATCATTGTCCTCTTCGTTGCAGCACTTGGAAGCTGCAAAAGCTGAAGAATTGAGGATGGGGGAAAGTGGTTTTCTATATTGCAATCAAGGACCAGGAGGTGCTTCTTCATCTCACTATCCGTACAGGAATCTTGGAAACAGTCATCATCAGCAACAGCAAGCATTGCATTTACAAGGTGCTATGTTACACCAGGGACATCATGTTGGATTTGGATCATCATCATCATCCTTAAGTGCAGTAAATGTTCTAAGAAACTCAACGTATGTTAGAGCTGCACAAGAATTGCTTGAAGAGTTTTGCAGTGTAGGGAGGGGTCAGTTTAAGAAGAGTAAGTTCAGTAGACAGAACTCAAACCCTAATAATTCAAACCCCGGTGGCGATGGTGGAGGTCCTTCTAATTCATCCTCATCAAAAGATCCTCCTCCTCCTACAACTATTTTGTCAGCGGCAGATAGGATTGAGCATCAGAGAAGGAAAGTCAAACTTTTATCAATGCTTGATGAGGCATGTAATCTTTCTCTTATCTCTATCTTCCTCCTTTCTCCAGAGAAATTTTATGTGGACCGGAGATACAACCACTACTGTGAACAAATGCAAATGGTAGTGAATTCATTTGATATAGTGATGGGTTTGGGTGCAGCAGTTCCATACACAGCACTGGCACAGAAAGCAATGTCAAGGCATTTCAGGTGTTTGAAAGATGCGATAACAGCACAAGTGAAACATAGTTGTGAGGTGCTGGGAGAGAAAGATGGTGGTGGTTCAACAGGTTTAACAAAGGGAGAAACACCAAGGCTTAAGATGCTTGAACAAAGCCTAAGACAACAAAGAGCATTTCATCAAATGGGGATGATGGAACAAGATGCTTGGAGACCACAGAGAGGTTTACCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAAACTGGGCTATCGAGAAATCAGGTATCAAATTGGTTCATTAATGCCAGGGTTCGATTGTGGAAACCTATGGTAGAAGACATGTACCAACAAGAATTTAAAGAAGGAGAAGGTGGTTCAGAAGAGAAAGAAAATAGGAATGAAAGCAACAACAGTAATAGTGGCCAACTAGCACAAACTCCAACATCAACAGCAACAACAGCGCTACCACCACCAACAATAACAACAGGCAAAAGATCCAATATCAATGCTCATGATAACGACCCTTCACTTGTTGCAATCAATACACAAGGCTTCTCGGAAAACCAAGCCTCCACCACCAACACAACCACCATTATCAATGCCACTCTCTCTCAAGTGGCGCCACCAGTGTCTCAGTCCTTAGATTCAGACCTCACTCCCCATATATCAATGCCAACTGATGACACGTGTCACAATGGTAACGCCGTTACAGGAGCTGAATATGGGTCCCAGGTCTCTGCAGGTGGTGCTGACATTGGATCCACTCTCATTAGATTTGGGACCACCGCCGGTGACGTGTCACTTACCTTAGGGTTACGCCACGCCGGGAACATGCCCGAGAAAACACCTTTCTCTCTTAGAGACTTTGGAGCCATTTAA 2511 0.448 TQLLDSGNKKVRGNIEEKGDDKDEEKEEFNMGIATPPPLPSIILSHSKTQPGESCSNSMSQDYQQGIFTFSNGFQRTTVTHQDQQQEHQIRRDKVRLQQGFEPPPQPPPPLVGIEEEPGGIPVYEPAGMLSEMFNFPHAGDTAAELLEQQQQQMTATFRSSGPQPVTSGSEWYGRRQGIITGLGPLGDSTKNHHHHQNDNNYNHHHHSQISSINAADSAAAHQAMQLFLMNPQTRSPSPPPPNSSSSTLHMLLPNPSSNNPLQGFATSSTAGGSYGQFTWVPDHSTEEGGNNGGVVEGQGLSLSLSSSLQHLEAAKAEELRMGESGFLYCNQGPGGASSSHYPYRNLGNSHHQQQQALHLQGAMLHQGHHVGFGSSSSSLSAVNVLRNSTYVRAAQELLEEFCSVGRGQFKKSKFSRQNSNPNNSNPGGDGGGPSNSSSSKDPPPPTTILSAADRIEHQRRKVKLLSMLDEACNLSLISIFLLSPEKFYVDRRYNHYCEQMQMVVNSFDIVMGLGAAVPYTALAQKAMSRHFRCLKDAITAQVKHSCEVLGEKDGGGSTGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQDAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEFKEGEGGSEEKENRNESNNSNSGQLAQTPTSTATTALPPPTITTGKRSNINAHDNDPSLVAINTQGFSENQASTTNTTTIINATLSQVAPPVSQSLDSDLTPHISMPTDDTCHNGNAVTGAEYGSQVSAGGADIGSTLIRFGTTAGDVSLTLGLRHAGNMPEKTPFSLRDFGAI 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1376 836 MobiDBLite consensus disorder prediction 231 268 - -
Lal23g1376 836 ProSiteProfiles 'Homeobox' domain profile. 590 653 IPR001356 GO:0003677
Lal23g1376 836 Pfam Associated with HOX 385 540 IPR006563 -
Lal23g1376 836 SUPERFAMILY Homeodomain-like 594 660 IPR009057 -
Lal23g1376 836 MobiDBLite consensus disorder prediction 42 60 - -
Lal23g1376 836 Coils Coil 8 28 - -
Lal23g1376 836 MobiDBLite consensus disorder prediction 245 268 - -
Lal23g1376 836 MobiDBLite consensus disorder prediction 1 60 - -
Lal23g1376 836 MobiDBLite consensus disorder prediction 413 446 - -
Lal23g1376 836 MobiDBLite consensus disorder prediction 663 718 - -
Lal23g1376 836 CDD homeodomain 593 654 IPR001356 GO:0003677
Lal23g1376 836 MobiDBLite consensus disorder prediction 10 30 - -
Lal23g1376 836 SMART prehox3 380 541 IPR006563 -
Lal23g1376 836 Gene3D - 596 658 - -
Lal23g1376 836 Pfam Homeobox KN domain 610 649 IPR008422 GO:0003677|GO:0006355
Lal23g1376 836 MobiDBLite consensus disorder prediction 663 678 - -
Lal23g1376 836 MobiDBLite consensus disorder prediction 413 449 - -
Lal23g1376 836 SMART HOX_1 593 657 IPR001356 GO:0003677
Lal23g1376 836 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 113 825 - -
Lal23g1376 836 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 113 825 - -
Lal23g1376 836 MobiDBLite consensus disorder prediction 679 718 - -
Lal23g1376 836 MobiDBLite consensus disorder prediction 181 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1376 Lal-Chr23 14437334 14445938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1376 380 834 Homeobox Transcription Factor Family AT2G23760 51.830 1.03e-139 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lal23g1376 POX 1.2e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1376 - - lang:109332370 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1376 23 14437334 14445938 Lal23g1376 23 14437334 14445938 ECH
Lal16g0191 16 1155619 1163024 Lal23g1376 23 14437334 14445938 LSH
Lal23g1376 23 14437334 14445938 Lal15g1093 15 9467215 9477223 PCT
Lal15g1093 15 9467215 9477223 Lal23g1376 23 14437334 14445938 PCT