Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1350 ATGTCATCATCGAATTCACCGTGTGCTGCGTGCAAGTGTCTGCGGCGGAAGTGCACACAAGAATGCGTGTTCGCGCCATATTTTCCACCGGACAACCCTCAAAGATTTGCGTACGTGCACAAAGTTTTCGGCGCCAGCAACGTGTCAAAGATTCTCAACGAACTTAACGCGGCGCAGCGAGAGGACGCCGTTAAGTCCCTCGCTTACGAAGCGGAGGCGCGTCTTCGTGACCCTGTTTATGGGTGCGTGGGTCTCATATCTGTTCTCCAACACAGGCTCAGGCAGATCCAACTGGAGCTTAATAATGCTAAGAAGGAACTTGCTACTTATATTGGACCCCAGGGCTTGCCTACCACCGCCATTCTTCAACAACACCCGGCTGCTGCCGCATACCCGTTTACCTCCTCGGTCTTTCCTGTCACCACCGCTGCTCACGGTGGTCAGTTGCTGCTTGGTGAACCTCAGCATCCACAACATCAGATCTTGGAGGCTCAGCAATTGGCTGCGGCTGTGGCTGCAAGAGAGCATCAAGAAATGTTTAGGGGTTTTGAGCATCAACAACAGCAGCAACCAGAGTTTCTGAGGTTTAATGGTGGTGGGTTCGATTTGGATTCAGTTGCAGGTGGTGGATTTAGCCAGCAGGTTTCACCAGCTGCTCCTATTTCCGATGATCAGTTATCTCCTTCATTGACTTTGGGGTCCTTTGAGAACCCTTTTCATCATATGCAGCAACCACAGCAAGGAGAACCTCATGCCCATATTCATTCTCATCATCTTCCACTTGAGGCACAGCTACTTCTCTCACCACATCAGGAAAAGCAAGAGCAGCAGCAACAAACCCAGCAGTCACAATTGCAACACCACCAGCAACAGTTGGAAAGGGATGAGTGTAGGAGTGTGGGCCCATCCTGTTGA 915 0.5104 MSSSNSPCAACKCLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVSKILNELNAAQREDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQLELNNAKKELATYIGPQGLPTTAILQQHPAAAAYPFTSSVFPVTTAAHGGQLLLGEPQHPQHQILEAQQLAAAVAAREHQEMFRGFEHQQQQQPEFLRFNGGGFDLDSVAGGGFSQQVSPAAPISDDQLSPSLTLGSFENPFHHMQQPQQGEPHAHIHSHHLPLEAQLLLSPHQEKQEQQQQTQQSQLQHHQQQLERDECRSVGPSC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1350 304 MobiDBLite consensus disorder prediction 267 304 - -
Lal23g1350 304 MobiDBLite consensus disorder prediction 207 255 - -
Lal23g1350 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 267 - -
Lal23g1350 304 Coils Coil 86 106 - -
Lal23g1350 304 Coils Coil 271 291 - -
Lal23g1350 304 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Lal23g1350 304 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Lal23g1350 304 MobiDBLite consensus disorder prediction 209 244 - -
Lal23g1350 304 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 267 - -
Lal23g1350 304 MobiDBLite consensus disorder prediction 269 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1350 Lal-Chr23 14296289 14300457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1350 1 226 AS2 family AT5G66870 54.435 2.94e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lal23g1350 LOB 1.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1350 - - gmx:100816778 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0208 16 1258069 1263122 Lal23g1350 23 14296289 14300457 LSH
Lal15g0153 15 1074025 1076606 Lal23g1350 23 14296289 14300457 LSH
Lal16g1407 16 10828205 10828888 Lal23g1350 23 14296289 14300457 PCT