Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1348 ATGGGTCTCTGTATTTCCAAACCCTCTTCAAATCTCACACTCTCATCTCCCAACAACCCCACACCGCTTCACCGTAACTCCGAATCTCACTCCACCACCGTCAATGCCGATAACCCTATCGAAGAACCACACAGTGCTAAAAAATCTCCGTTATTCTCGTTTTACACTCCAAGTCCGGCACACTACTTCTTCTCCAAGAAATCTCCGGCGAATTCGACTTCCAACTCCACGCCTGGCCGGTTTTTCAAGCGCCCATTTCCGCCGCCGTCTCCGGCGAAGCATATTAGAGCGGTGCTCGCTCGCCGCCATGGTTCAGTGAAGCCCAACGAGGCTACGATAGTGGAAGGTAACGAAGCTGATGCGGTAGCTACCGCGCTTGACAAGAGTTTTGGATTCTCGAAGCATTTTGTAAAGAAATATGAAGTGGGAGGAGAAATTGGGAGAGGGCATTTTGGGTATACTTGTGTTGCAAAATTTAAGAAAGGGGTGATGAAAGGTCAGCAAGTAGCTGTCAAAGTCATCCCTAAAGCAAAGATGACCACTGCCATTGCTATTGAGGATGTGAGAAGGGAAGTAAAAATATTGAGAGCTTTGACTGGACACAAAAATCTAGTACAATTCTATGATGCATACGAAGACCATGATAATGTCTATATAGTAATGGAATTGTGCGAAGGAGGGGAGTTGTTGGATAGAATACTATCAAGAGGTGGGAAATACACAGAGGAAGATGCAAAATTTGTCCTAAGACAAATACTGGATGTTGTTGCTTTTTGCCATCTACAGGGTGTAGTGCATCGTGATCTTAAACCTGAGAACTTCTTGTTCACATCCAAGGATGAGAACTCAGAGCTGAAGGCCATAGACTTTGGGTTGTCGGATTTTGTAAAACCAAATGAAAGGCTTAATGATATTGTTGGTAGTGCCTACTATGTGGCTCCTGAAGTTCTATACAGATCTTACAGTACAGAGGCTGATATCTGGAGCATTGGTGTGATTGCATATATTTTATTATGTGGCAGTCGACCCTTTTGGGCTCGGACAGAGTCTGGTATCTTTCATGCTGTAGTGAAAGCTAATCCAAGTTTTGATGAACCTCCTTGGCCTTCTCTATCTTCTGAGGCAAGGGATTTTGTCAAGAAATTGCTAAACAAAGATCCACGGAGAAGAATGACTGCAGCACAGGCATTAAACCATCCATGGATTAAAAACTATAAGGCTGTTAAAGTACCGCTGGATATTCTAATATTCAAGCTCATGAAGGAATACATGCACTCCTCGTCTCTACGAAAAGCAGCTTTAAGGGCTCTGTCTAAAACTTTAACTGTTGATGCGCTATTTTATATGAAAGAGCAGTTTGCACTTTTAGAGCCAAACAAAAATGGAACTGTTAGCTTGGAAAATATCGAAGCGGCCTTGATGATAAATGCAACAAATGCTATGAAGGAGACACGCATTCCTGACCTTCTGGCATCACTTAATGCATTGCAACATAGGAAGATGGATTTTGATGAGTTTTGTGCAGCTGCACTCAGTGTTCATCAACTTGAAGCACTTGACCGGTGGGAGCAACATGCACGTTGTGCCTATGAACTTTTTGAAAAGGATGGAAACAGGGCTATAGTCATTGAGGAGCTAGCTTCGGAGCTTTGCCTTGGTCCATCTGTCCCTGTTCATTCTGTTCTTCATGACTGGATTCGGCACACCGATGGAAAGTTGAGCTTCCTTGGATTTGTAAAATTGCTGCATGGCCCATCTCGGAGTCTTTCAAAAGCTCAATAG 1782 0.436 MGLCISKPSSNLTLSSPNNPTPLHRNSESHSTTVNADNPIEEPHSAKKSPLFSFYTPSPAHYFFSKKSPANSTSNSTPGRFFKRPFPPPSPAKHIRAVLARRHGSVKPNEATIVEGNEADAVATALDKSFGFSKHFVKKYEVGGEIGRGHFGYTCVAKFKKGVMKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKFVLRQILDVVAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPNERLNDIVGSAYYVAPEVLYRSYSTEADIWSIGVIAYILLCGSRPFWARTESGIFHAVVKANPSFDEPPWPSLSSEARDFVKKLLNKDPRRRMTAAQALNHPWIKNYKAVKVPLDILIFKLMKEYMHSSSLRKAALRALSKTLTVDALFYMKEQFALLEPNKNGTVSLENIEAALMINATNAMKETRIPDLLASLNALQHRKMDFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELCLGPSVPVHSVLHDWIRHTDGKLSFLGFVKLLHGPSRSLSKAQ 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1348 593 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 49 588 - -
Lal23g1348 593 SUPERFAMILY EF-hand 430 584 IPR011992 -
Lal23g1348 593 Pfam Protein kinase domain 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1348 593 CDD STKc_CAMK 139 401 - -
Lal23g1348 593 MobiDBLite consensus disorder prediction 66 87 - -
Lal23g1348 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 588 - -
Lal23g1348 593 SMART serkin_6 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1348 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Lal23g1348 593 Gene3D Phosphorylase Kinase; domain 1 133 228 - -
Lal23g1348 593 Gene3D - 442 511 - -
Lal23g1348 593 SUPERFAMILY Protein kinase-like (PK-like) 137 437 IPR011009 -
Lal23g1348 593 MobiDBLite consensus disorder prediction 1 48 - -
Lal23g1348 593 ProSiteProfiles Protein kinase domain profile. 140 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1348 593 MobiDBLite consensus disorder prediction 66 80 - -
Lal23g1348 593 Gene3D Transferase(Phosphotransferase) domain 1 229 415 - -
Lal23g1348 593 ProSitePatterns Protein kinases ATP-binding region signature. 146 172 IPR017441 GO:0005524
Lal23g1348 593 MobiDBLite consensus disorder prediction 1 39 - -
Lal23g1348 593 Gene3D - 420 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1348 Lal-Chr23 14280446 14284556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1348 1 593 EF-hand Containing Proteins AT3G50530 73.259 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal23g1348 Pkinase 7.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1348 K00924 - tcc:18611088 960.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0724 16 4673891 4679295 Lal23g1348 23 14280446 14284556 LSH
Lal15g0689 15 4778259 4783566 Lal23g1348 23 14280446 14284556 LSH
Lal16g1403 16 10741340 10749474 Lal23g1348 23 14280446 14284556 PCT