Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1328 ATGGCGGATGAAGAGTCTCCAACCACCGGCACCGGGAGGCGAAGGGCCAGAGGTCCAGAGGCCACCGCCCGAAGCGAAGCCCTAGAACGTCTCAAAGCCCGGCTCCGTGGCGGCCGCAGATCTGATGATGGCGGACCTCAAATCAGGTTAGAAAACCCTATTTATGACACTATCCCTGAGGACGAGTATAACGCCCTCGTCGCCAAGCGCCGCGAACAAGCGCAATCGTTCATCGTCGATGATGACGGCCTTGGCTACGGTGACGAAGGTGAAGAAGAGGATTGGTCAAAAGCCGGATTCACTCTCTCAGATGAATCAGACGATGAATTTGAGAAACCCAAGCGGAAGAAAGTTGAAAAGAAAGATCCTCACATAAAACGACCTTCCGCTTCTTCTGCTTCGCTTTCCGCTGCTGCATCCATTATGGGCGCGAACAGGTTATCTTCGATGTTCACTTCATCCGTTTTCAAGAAGAGAGATGATAAGTCATGTGACAGCATCATTGATGATGTGATCGCGGAGTTTGCGCCTGATGAGAATGATAGACAAAGGCGTAGAAGGGTGCAATTGAATTCGGTTTCATCTGATTCTGGTGCCAGTGAAGCAATAAGGATTAACAGTGGCTTCAGTGAGAAACCGTCCATTGGCGACTCTCCTGATTCAATTAGAGGTTATACTGTTGCAAATTGTGACACTGAATCAGTTAGGGCTGTTAAGAACACTAATAGTTCTGACTTAGGTTTAGAGAAAAATTATGACACTTTTAAAGAAAATGTGTCCTGTGTTGAAGATGGAAAAGATTTTAGTTCTGAAAACGGTGAATCATCAATTGAGCAAGTGCAACCAAATGGACATTTAGTCGAGGAGAAGGTGATGAAGGAAATTGAAGTAGAAAGGAATCCGGCTACAAAAAATGAGGTATTTACTCTGAATGCAAAGGTTAGTAAGGAAGCTGACCATGGATTGAGTGCAACTGCGGATTGGAAAGCATTGAAGAGTGGTGGAGTGGAGAACATTGTTGCTGAATCAAAAGTGGTGAGGGAAGCTTCAAATGCCGAACAATACTCAGAGTTTAATCTCGATAAAGATGGATTACTGCCTTTCTATTTACTTGATGCATACGAGGAATTTAAAGGAGTCAATGCAGGCACAGTTTATTTGTTTGGGAAGGTCAAAGCCGGGAACATGTATCAGAGTTGCTGTGTTATTGCAAAGAATATTCATAGATGTGTCTATGCAATTCCAACTCATCCTTTACATTACACTGATGAGATAATAAAGCTTGAGAAAGATGTCCAAGAATCTCAAATTTCTTCAGCAGATTTCCATAAAAAGTTGCAAGATGCAGTATCTGGTTTAAAGAATGAGATAGCAAAACATCTTTTGGATCTGAACGTGTCAACCTTTACCATGACACCTGTGAAGAGGAAATATGCATTTGAACATTCTGAAATTCCTGCTGGTGAAAACTATGTGGTGAAAATCAGTTATCCGTTCAAGGATCCAGAACTTCCAGTAAACCTAAGAGGAGAAAGTTTCTGTGCCCTTTTAGGAACTCAAAGCAGTGCACTGGAGCTTCTTCTGATTAAAAGGAAGATAAAGGGGCCTTCATGGCTACAGATTTCTAACTTTTCAACCCCCACACCTTCTCAAAGGGTTAGCTGGTGCAAGTCTGAAGTGATTGTAGACTCTCCTAAAGACATAAAGATTCCAACTCCCTCAAAAACCCCGGTCGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACCACCATAAATGAAAAACAGGACATAAATGAGATTGTATCTGCATCAATTGTCAGCTGCAACAGGGTTAAGATTGATACTCCAATGTTGGCTTCAGAGTGGAAGAGAGCTGAAATGCTGACCCATTTTACTGTGGTCCGAAAACTTGATGGGACTATATTTCCATTGGGATTCAGTAAGGAGGTCACCGACAGGAACACAAAAGCTAGGTCAAATGTTCTGTTTGTTGAAAGCAGCGAAAGAGCTTTGTTAAACCGTCTGATGATAGAGCTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTCGATGTTCTTCTCCACAGATCCCAGGCTTTGAAAGTACCACCCCGATTCTGGTCTAAACTAGGTCGCCTCAATCGTTCTGTGATGCCTAAGCTTGACAGAAAGTACAAAGGTTCTGGAGCTAGTCATGGTATCATGTCCTGCATTGCTGGCCGGCTTCTTTGTGACACATACTTGTCATCCCGTGAGCTATTGAAGGAGGTTAGCTATTCTTTAACTCAACTAGCAAAAACACAACTGAACATGGTTCGGAGGGAAGTTGCTCCACACGACATTCCAAAGAAGTTTCAATCAGCAGAATCCCTAATGGAGCTTATTGAATATGGTGAGACAGATGCTGTGTTGTCTATGGAACTCATGTTTCACTTATGTATTCTTCCTCTCACACGTCAGCTGACTAATATAAGTGGTAACCTGTGGGGGAGAACACTTCAGGGTGCACGGGCACAGAGAGTGGAGTATCTTTTGTTGCATGCTTTCCATGCAAAAAAACATATTGTGCCAGACAAGGTCTCAATCTATTCAAAAGAAACAAAATTGACAAAACGCAGAGCACCTAATGGTGTTGATGATAGTAACTTTGATGAAGCAGATATTGATGATGCGAACTATGATAATGTTGCTTTCAACGGTGATAATAAGAAAAGCAAAAAGACTTCTTCCTATGCTGGGGGATTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAGTATAACATCTGCTTCACTACTGTTGAAAGATCTTCAGATGGATCTTTTCCTCGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGTTGCTGAGAAATCTGGTTGAAAGGAGGAGAATGGTAAAGTCATGGATGAAGAAAGAATCTGGTCTTAAACTCCAGCAACTGGACATTCAGCAGCAAGCACTGAAACTTACTGCAAACAGTATGTATGGATGCCTGGGCTTTTCCAATTCAAGATTTTATGCAAAGCCAATAGCCGAGCTAATTACCCTACAGGGAAGGGAAATACTGCAGAGCACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTTATTTCTAGTATTCTGCTTCTTGAAGTTATCTATGGTGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAATCAAAAGCAATGGCTGGAAAAGTTATTCAAGAAGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGAATGCTACTACTTAAGAAAAAGAAATATGCAGCTGTAAAGGTTCAGTTCAAAAATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTTCGTCGCGACTGGAGCTTATTAGCTAAAGAAGTAGGAGATTTTTGCTTGAGTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTTGTTGAATCAATACACAACTATCTCATGAAGGTGCAAGAAGAAATGAGGAGCGGTGATGTACCACTGGAAAAATATGTCATCACAAAGACATTGACAAAACCTCCTGAAGCTTATCCTGATGCTAAAAATCAACCACATGTTCTTGTGGCACAAAGATTGAAGCAACAGGGTTACTCCTCTGGTTGCTCTGTTAATGATACCATCCCTTACATAATTTGCAATGAGCAGGGAGGTAGTTCAGGCAGTGCTACGGGCATTGCTCAGCGTGCTAGACATCCCGATGAACTTAAACAAGAACAAGAGAAATGGATGATTGACATCGAGTACTACTTGTCACAACAGATTCATCCTGTTGTATCACGTCTTTGTGCATCAATTCAAGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTTTAAGTGATGATCCTACAAGCTCACTCTTGTGTTCTGCTGATGATGAAGAGAGGTATCGGGGATGTGAGCCTTTGGTCTTGTCATGCCCCAGCTGCTCTGGAACTTTTGACTGCCCACCTGTCTTCAAATCCATTTGTTTGTTAGGAAGTGGAAAGCCAACCAGCCCAGGCATGGAGGATTCAAACTACAATTTCTGGCATAAGCTGCACTGTTCTAAATGCCCAGAAGAGGATGGTGCTGGCAGAATTTCACCTGCAATGTTAGCTAATCAGGTCAAAAGGCAATCAGAGAAGTTTATTTCATTGTACTATAAAGGTTTACTAATGTGTGATGATGAAACCTGTAAGCATACCACTCGAAGTATCAACCTTCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTCCTTAGAAAGTACACAGAAGCAGACTTGTACAAACAACTATCATATTTTTGCCATGTGCTGGACACTGTTTCCTGTGTAGAAAAGATGGAGACTAAATCTAGGATACCGGTCGAGAAAGAGTTGATGAAACTTAGGCCGGTGGTTGATATGGCAGCATCAATGATACAGAGGATCAGGGACCGCTGTGCCTATGGATGGGTGAAGCTGCAGGACTTAGTCATTACAGATTAA 4680 0.4188 MADEESPTTGTGRRRARGPEATARSEALERLKARLRGGRRSDDGGPQIRLENPIYDTIPEDEYNALVAKRREQAQSFIVDDDGLGYGDEGEEEDWSKAGFTLSDESDDEFEKPKRKKVEKKDPHIKRPSASSASLSAAASIMGANRLSSMFTSSVFKKRDDKSCDSIIDDVIAEFAPDENDRQRRRRVQLNSVSSDSGASEAIRINSGFSEKPSIGDSPDSIRGYTVANCDTESVRAVKNTNSSDLGLEKNYDTFKENVSCVEDGKDFSSENGESSIEQVQPNGHLVEEKVMKEIEVERNPATKNEVFTLNAKVSKEADHGLSATADWKALKSGGVENIVAESKVVREASNAEQYSEFNLDKDGLLPFYLLDAYEEFKGVNAGTVYLFGKVKAGNMYQSCCVIAKNIHRCVYAIPTHPLHYTDEIIKLEKDVQESQISSADFHKKLQDAVSGLKNEIAKHLLDLNVSTFTMTPVKRKYAFEHSEIPAGENYVVKISYPFKDPELPVNLRGESFCALLGTQSSALELLLIKRKIKGPSWLQISNFSTPTPSQRVSWCKSEVIVDSPKDIKIPTPSKTPVEIPPVVVTAINLKTTINEKQDINEIVSASIVSCNRVKIDTPMLASEWKRAEMLTHFTVVRKLDGTIFPLGFSKEVTDRNTKARSNVLFVESSERALLNRLMIELHKLDSDVLVGHNISGFDLDVLLHRSQALKVPPRFWSKLGRLNRSVMPKLDRKYKGSGASHGIMSCIAGRLLCDTYLSSRELLKEVSYSLTQLAKTQLNMVRREVAPHDIPKKFQSAESLMELIEYGETDAVLSMELMFHLCILPLTRQLTNISGNLWGRTLQGARAQRVEYLLLHAFHAKKHIVPDKVSIYSKETKLTKRRAPNGVDDSNFDEADIDDANYDNVAFNGDNKKSKKTSSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSDGSFPRLPSSKTTGVLPELLRNLVERRRMVKSWMKKESGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVISSILLLEVIYGDTDSIMIYSGLDDIAKSKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKNGTPYEVIERKGLDIVRRDWSLLAKEVGDFCLSQILSGGSCEDVVESIHNYLMKVQEEMRSGDVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVNDTIPYIICNEQGGSSGSATGIAQRARHPDELKQEQEKWMIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEALSDDPTSSLLCSADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICLLGSGKPTSPGMEDSNYNFWHKLHCSKCPEEDGAGRISPAMLANQVKRQSEKFISLYYKGLLMCDDETCKHTTRSINLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVLDTVSCVEKMETKSRIPVEKELMKLRPVVDMAASMIQRIRDRCAYGWVKLQDLVITD 1559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1328 1559 Pfam DNA Polymerase alpha zinc finger 1350 1555 IPR015088 GO:0003887|GO:0006260
Lal23g1328 1559 Pfam DNA polymerase alpha subunit p180 N terminal 28 95 IPR024647 -
Lal23g1328 1559 SMART polmehr3 581 1090 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal23g1328 1559 TIGRFAM pol2: DNA polymerase (pol2) 54 1308 - -
Lal23g1328 1559 PRINTS DNA-directed DNA-polymerase family B signature 938 951 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal23g1328 1559 PRINTS DNA-directed DNA-polymerase family B signature 1014 1026 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal23g1328 1559 PRINTS DNA-directed DNA-polymerase family B signature 1076 1084 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lal23g1328 1559 Gene3D Palm domain of DNA polymerase 909 1141 IPR023211 -
Lal23g1328 1559 Pfam DNA polymerase family B, exonuclease domain 398 772 IPR006133 -
Lal23g1328 1559 Gene3D Helix hairpin bin 977 1028 - -
Lal23g1328 1559 Pfam DNA polymerase family B 838 1310 IPR006134 GO:0000166|GO:0003677
Lal23g1328 1559 MobiDBLite consensus disorder prediction 181 220 - -
Lal23g1328 1559 Gene3D - 408 534 - -
Lal23g1328 1559 Gene3D - 581 823 IPR036397 GO:0003676
Lal23g1328 1559 Coils Coil 1104 1124 - -
Lal23g1328 1559 MobiDBLite consensus disorder prediction 80 137 - -
Lal23g1328 1559 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1556 - -
Lal23g1328 1559 MobiDBLite consensus disorder prediction 17 46 - -
Lal23g1328 1559 CDD DNA_polB_alpha_exo 581 830 - -
Lal23g1328 1559 SUPERFAMILY DNA/RNA polymerases 912 1326 IPR043502 -
Lal23g1328 1559 Gene3D - 1154 1340 IPR042087 -
Lal23g1328 1559 MobiDBLite consensus disorder prediction 190 204 - -
Lal23g1328 1559 Gene3D - 824 869 - -
Lal23g1328 1559 MobiDBLite consensus disorder prediction 90 127 - -
Lal23g1328 1559 CDD POLBc_alpha 914 1326 IPR045846 GO:0003887|GO:1902975
Lal23g1328 1559 SUPERFAMILY Ribonuclease H-like 362 867 IPR012337 -
Lal23g1328 1559 MobiDBLite consensus disorder prediction 1 55 - -
Lal23g1328 1559 ProSitePatterns DNA polymerase family B signature. 1078 1086 IPR017964 GO:0000166|GO:0003676
Lal23g1328 1559 Gene3D - 368 567 - -
Lal23g1328 1559 Gene3D DNA Polymerase alpha, zinc finger 1349 1544 IPR038256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1328 Lal-Chr23 14138128 14150114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1328 8 1557 Core DNA Replication Machinery Family AT5G67100 59.569 0.0 1804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1328 K02320 - gmx:100798779 2168.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1328 23 14138128 14150114 Lal23g1328 23 14138128 14150114 ECH