Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1326 ATGGGGGATAGTGATGATGATATGAATATGTATAACCACTATGACAAGAACCTTTCTACCTCACACGATGAAATCTCCATTTTCCTGCGTCAGATTCTTCTACGTTCATCCTCTTCTTCTTCTTCACACGTCAACAACTCCAACTCCATTTTACCTGAATCTTTCAGCTCCAACCATGATGACAACAAGATCTTCACCGTTGGTGCTGGAGGAACCACTAACTCAATGGCCACTCACGTTTCCATTAAGGGTCAACAAGGACTGAGCGAGAATGATACCGATGACTACGATTGTGAAAGTGAGGAGGGTGTTGAAGCATTTCCGGAAGAAGTTCCAACAAAATCAGTTCCTTCTAGGGGTTCTTCAAAAAGAAGCAGAGCAGCAGAAGTTCATAATTTGTCTGAAAAGCGAAGAAGGAGTAGAATCAATGAGAAAATGAAGGCTTTGCAAAATCTTATTCCGAATTCTAACAAGACTGATAAGGCTTCAATGCTCGATGAAGCTATTGATTACCTTAAACAGCTTCAGCTCCAAGTACAGATGCTGTCGATGAGAAATGGATTAAGTTTGCATCCTATGTGCTTTCATGAAGGCTTGCAGCCTCTGCAATTGTCTCGGATGAGTATGGAGTTGGGTGAAGAAAACAGGCCAATCCCTTTAAACATGACAACTACTCTGCCTATGCACCAAAGGAACTCCTTAAACTATGCATCATCTAATCTACCAAACCAACACACCTTTCCTAATCAGCCATCAGTGCCTTATCCTTCATATGTTAACAACTCAGAAGCTTCTTTTGGCCTTGAATCTCCAATCCTACCACATATAAAACCTTTTCAGCCTACAAGTTCTTCTGAGATATGCAGGGAAGACATACTGCAGCACCAGCAATCAAATGTAGGCCATTCAGATACCAATCTTTTAGTTGGTTCTCAAGCTATCAAAGAATTGAAGTCAGGGACAACCGATGTATCACCATCCTTTGACATGCAAACATCGGAAGCTAAGGACGATAGCTCTTTCCAAACATGCATTTCTGGAAGAGAACAATCTGGAGTGATCATGAAAAATAGTGAGGCCAACAATAATCTTGCATCACAGTTTAGTAGGTAG 1113 0.4124 MGDSDDDMNMYNHYDKNLSTSHDEISIFLRQILLRSSSSSSSHVNNSNSILPESFSSNHDDNKIFTVGAGGTTNSMATHVSIKGQQGLSENDTDDYDCESEEGVEAFPEEVPTKSVPSRGSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIDYLKQLQLQVQMLSMRNGLSLHPMCFHEGLQPLQLSRMSMELGEENRPIPLNMTTTLPMHQRNSLNYASSNLPNQHTFPNQPSVPYPSYVNNSEASFGLESPILPHIKPFQPTSSSEICREDILQHQQSNVGHSDTNLLVGSQAIKELKSGTTDVSPSFDMQTSEAKDDSSFQTCISGREQSGVIMKNSEANNNLASQFSR 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1326 370 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 18 306 IPR031066 -
Lal23g1326 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 186 IPR036638 GO:0046983
Lal23g1326 370 MobiDBLite consensus disorder prediction 83 138 - -
Lal23g1326 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Lal23g1326 370 MobiDBLite consensus disorder prediction 124 138 - -
Lal23g1326 370 MobiDBLite consensus disorder prediction 92 106 - -
Lal23g1326 370 PANTHER TRANSCRIPTION FACTOR SPATULA 18 306 - -
Lal23g1326 370 SMART finulus 132 181 IPR011598 GO:0046983
Lal23g1326 370 CDD bHLH_AtPIF_like 126 188 - -
Lal23g1326 370 Gene3D - 121 185 IPR036638 GO:0046983
Lal23g1326 370 Pfam Helix-loop-helix DNA-binding domain 130 176 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1326 Lal-Chr23 14126122 14129257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1326 91 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.439 1.00e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g1326 HLH 5.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1326 - - var:108334706 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1326 23 14126122 14129257 Lal23g1326 23 14126122 14129257 ECH