Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1325 ATGACCAATCTGAACAACGTTGGCGCAGTAATGGATACGGAGATGTTTGGATTGTCTGAAAATGAGATTTTGGCGTACATTGAGAGTGACACTTTCCAATCTGTCGCTGATGGCACTCCACAAACTGAACTTTGTTGCATTTGCCAGGAGAATTATTTGAATGGAGAAAAACTTGGGATACTAGACTGCAGGCACAAATTCCATTTCGATTGCATTAAACGGTGGTTGCAGTTTGAGAACACATGCCCATTATGCAAACGAGTAGGACTAAATATACCTGTTGATGAAGAGGAGGAAAATGAAGGTGGGGGTGAAGGTGGCGGTGAAGCTGAAGGTGAAGCTGAAGGTGGCGGTGAAGCTGAAGGCGGAGGTGAAGGTGAAGGTGCAGGTGAAGGTGAAGCTGGCAATGAATGA 414 0.4541 MTNLNNVGAVMDTEMFGLSENEILAYIESDTFQSVADGTPQTELCCICQENYLNGEKLGILDCRHKFHFDCIKRWLQFENTCPLCKRVGLNIPVDEEEENEGGGEGGGEAEGEAEGGGEAEGGGEGEGAGEGEAGNE 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1325 137 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 89 IPR013083 -
Lal23g1325 137 MobiDBLite consensus disorder prediction 95 120 - -
Lal23g1325 137 Pfam Ring finger domain 45 86 IPR001841 -
Lal23g1325 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 90 IPR045191 GO:0061630
Lal23g1325 137 SMART ring_2 45 85 IPR001841 -
Lal23g1325 137 MobiDBLite consensus disorder prediction 93 137 - -
Lal23g1325 137 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE 17 90 - -
Lal23g1325 137 ProSiteProfiles Zinc finger RING-type profile. 45 86 IPR001841 -
Lal23g1325 137 SUPERFAMILY RING/U-box 44 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1325 Lal-Chr23 14120294 14121534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1325 17 93 C3H Transcription Factor Family AT2G15530 43.210 1.79e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1325 - K22753 lang:109331094 147.132