Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1323 ATGTGGGATCTGAATGATTCCCCTGATCAGAGATATGATAACAAAGGAAAAAGGGTCGGATCTGTTTCCAATTCAAGTTCATCTGCAGTGGTAATAGAAGATGATGGATCAGATGGAGAGTTGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCATGATGGTGGTGGTGGTGATGATGATGAGTCCATGGATAGTGACAACTTACCCGTGACTCAGCAGTTTTTCCCGGTGGAGGAGGAGTCTGAGGTGGCAATACCCTCCGGTGAGGGTGGTAGTTCTTCGAACTTCCCTCGAGCTCACTGGGTAGGAGTGAAATTTTGTCAATCAGAGGGACTTGGTGGTGGAAAATCAGTGGAAATGTCTCAGCCTATGAAGAAGAGTAGAAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTTACCTTTTACAGAAGAACTGGTCGATGGGAATCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCAGCAATAAAATTTCGGGGAGTAGAGGCAGACATAAACTTCAACATAGAAGATTATGAAGAGGATTTGAAACAGATGAGTAATTTAACGAAGGAGGAGTTTGTGCACGTACTTAGACGACAAAGTACTGGATTTCCGAGAGGAAGTTCCAAATATAGAGGTGTAACTCTGCACAAGTGTGGAAGATGGGAAGCAAGAATGGGTCAATTTTTAGGCAAAAAGTATGTTTATCTGGGTCTTTTTGACACGGAGGTTGAAGCTGCAAGGGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCTGTCACCAATTTTGACCCCAGCATCTATGATAATGAGCTTAAATCTGAATCCTCAGGGAACGTTGCAGATCACAATTTGGATTTAAGTTTGGGCAATTCGAGCTCTAAGAACAGCAGTAATCAAACATCAGGGAATCACACCCCAAATGTTTCAACTTGTCACACCCCTAAGCTTGTGAACATACTACCAAAACTATGTGGTAAAAGCAACATGGATGGGCACGGAACTCATCTTCAATCTCCAGCCTCTATTAATGAAATGCAAATACATGGTCCTTTGAGTTCATCAGGAGAACCTCACAATTTTGCTCATCATCTTCACCAACCAAATTTTTATTTTCCCAGCAGCAGCAATGGAGTGCGTATAGGAAGTGATCTTTCATTATCAATGAATGATCAACAAAAATGGCAATCAGGGCCTCCACTCTTTGTAGCAACTGCTGCAGCATCATCAGGATTCTCACCTCAGATAAGACCCTCCCAAGGTTGGGTGCAGAAAAATGGCTTCTACAATCTTATGAGACCCCCTTGA 1383 0.4309 MWDLNDSPDQRYDNKGKRVGSVSNSSSSAVVIEDDGSDGELKKRSSKIFGFSVTHDGGGGDDDESMDSDNLPVTQQFFPVEEESEVAIPSGEGGSSSNFPRAHWVGVKFCQSEGLGGGKSVEMSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEVEAARAYDKAAIKCNGKEAVTNFDPSIYDNELKSESSGNVADHNLDLSLGNSSSKNSSNQTSGNHTPNVSTCHTPKLVNILPKLCGKSNMDGHGTHLQSPASINEMQIHGPLSSSGEPHNFAHHLHQPNFYFPSSSNGVRIGSDLSLSMNDQQKWQSGPPLFVATAAASSGFSPQIRPSQGWVQKNGFYNLMRPP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1323 460 CDD AP2 140 197 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 360 458 - -
Lal23g1323 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 336 - -
Lal23g1323 460 Gene3D AP2/ERF domain 231 290 IPR036955 GO:0003700|GO:0006355
Lal23g1323 460 Gene3D AP2/ERF domain 139 198 IPR036955 GO:0003700|GO:0006355
Lal23g1323 460 MobiDBLite consensus disorder prediction 1 16 - -
Lal23g1323 460 MobiDBLite consensus disorder prediction 17 32 - -
Lal23g1323 460 CDD AP2 231 291 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 360 458 - -
Lal23g1323 460 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 12 336 - -
Lal23g1323 460 MobiDBLite consensus disorder prediction 116 140 - -
Lal23g1323 460 ProSiteProfiles AP2/ERF domain profile. 140 196 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Lal23g1323 460 SUPERFAMILY DNA-binding domain 231 291 IPR016177 GO:0003677
Lal23g1323 460 MobiDBLite consensus disorder prediction 304 338 - -
Lal23g1323 460 MobiDBLite consensus disorder prediction 1 68 - -
Lal23g1323 460 SMART rav1_2 232 295 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 SMART rav1_2 140 202 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 Pfam AP2 domain 231 280 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 Pfam AP2 domain 140 188 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 PRINTS Ethylene responsive element binding protein signature 271 291 IPR001471 GO:0003700|GO:0006355
Lal23g1323 460 ProSiteProfiles AP2/ERF domain profile. 232 289 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1323 Lal-Chr23 14095655 14102235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1323 1 459 AP2-EREBP Transcription Factor Family AT4G36920 55.870 2.28e-139 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal23g1323 AP2 7.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1323 K09284 - gmx:100786333 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1323 23 14095655 14102235 Lal23g1323 23 14095655 14102235 ECH
Lal16g0226 16 1353067 1357016 Lal23g1323 23 14095655 14102235 LSH
Lal15g1247 15 13984755 13990074 Lal23g1323 23 14095655 14102235 LSH
Lal23g1323 23 14095655 14102235 Lal15g1247 15 13984755 13990074 PCT
Lal23g1323 23 14095655 14102235 Lal16g1374 16 10191039 10195034 PCT
Lal15g1247 15 13984755 13990074 Lal23g1323 23 14095655 14102235 PCT
Lal16g1374 16 10191039 10195034 Lal23g1323 23 14095655 14102235 PCT