Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1321 ATGAACGGTGAAAGTGGCGGTGGAGGAGAGAGAGAGATGGGTACGAAGAAGAGAGGGATAGAGAGTGGTATGAGAAGGTACAAAGGAATAAGGATGAGGAAGTGGGGAAAGTGGGTTGCTGAGATTAGAGAACCAAACAAGCGTTCAAGGATTTGGCTCGGTTCTTATTCTACTCCCGTCGCGGCGGCGCGTGCTTACGACACAGCCGTCTTCTATCTCCGTGGACCATCAGCTCGTCTCAACTTTCCCGACCTTCTAACGGGCGATAACGGCGCCGTTCTTTCCAACTGTGATATCTCAGCAGCTTTCATCAGAAAGAAAGCAACCGAGGTCGGTGCCAGAGTCGATGCCCTACAAGCCACTCGCCGCCACAACCATGTGGCACCGGTGCCTGTCGTATCTGATGGCGGCGACGACAACCGTTCAGTTCAGTTCGCGGAGCGGGTTGATCTGAATAAGAAACCCGAACCGGAGGATTCAGACAGTGAGTGGGATATGAATTAA 504 0.5258 MNGESGGGGEREMGTKKRGIESGMRRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLTGDNGAVLSNCDISAAFIRKKATEVGARVDALQATRRHNHVAPVPVVSDGGDDNRSVQFAERVDLNKKPEPEDSDSEWDMN 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1321 167 MobiDBLite consensus disorder prediction 141 161 - -
Lal23g1321 167 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Lal23g1321 167 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Lal23g1321 167 MobiDBLite consensus disorder prediction 1 20 - -
Lal23g1321 167 CDD AP2 26 85 IPR001471 GO:0003700|GO:0006355
Lal23g1321 167 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Lal23g1321 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 8 161 - -
Lal23g1321 167 MobiDBLite consensus disorder prediction 129 167 - -
Lal23g1321 167 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Lal23g1321 167 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Lal23g1321 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 8 161 - -
Lal23g1321 167 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Lal23g1321 167 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1321 Lal-Chr23 14088659 14089162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1321 14 165 AP2-EREBP Transcription Factor Family AT5G67190 55.367 2.37e-55 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal23g1321 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1321 K09286 - gmx:100527066 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1321 23 14088659 14089162 Lal23g1321 23 14088659 14089162 ECH
Lal16g0228 16 1370204 1370722 Lal23g1321 23 14088659 14089162 LSH
Lal15g0173 15 1218914 1219408 Lal23g1321 23 14088659 14089162 LSH