Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1314 ATGGATCGGATCAAGGGCCCGTGGAGTCCAGAAGAGGACGATGCTCTGCAAAAACTCGTAGACAAACACGGGCCCAGGAATTGGTCTCTGATCAGTAAATCTATTCCTGGTCGATCTGGCAAATCTTGTAGGCTCCGCTGGTGCAACCAGCTCTCTCCACAGGTTGAGCATCGGGCTTTCACACCTGAAGAAGACGAAACCATTATCAGAGCCCATGCCCGTTTCGGTAACAAATGGGCCACCATAGCCCGAATCCTCTCAGGCCGAACCGACAACGCAATCAAGAACCATTGGAACTCCACCTTGAAGCGCAAGTGTGGTTCCTTCATGATCGATGAACCTCACCTTAATCCTCATCCTTTAAAGCGTTCTGTTAGTGCTGGTGCTGCTATCCCTGTCTCCACTGTACTTTTCATGAACCCTTCCACACCTAGTAGTCCCTCTGGATCTGATGTGAGCGAGTCCAGTGTACCGGTTGCATCCTCATCACACGTGTACCGACCTGTTCCAAGAACAGGTGGAGTTCTAATGGAAACGACGTCGTCTTCAAATGATCCTCCAACTTCATTGTCGCTCTCCCTTCCAGGTGTCGATTCGTCTTCTGAAGTCTCGAATCGTGTAACGGAGTTGAATGTTATGCATATGTTATCACCGATGATGGTGGCGCCGGTGACAGTTGTTGCTCCGGTGGCGGTGCAGGAGGAGAAACATGATCTGAAATCGGTGGCGCCGTTTAATTTTAGTGGAGAATTGTTGAGGGTGATGCAGGAAATGATAAGGAAGGAGGTGAGGAGTTTTATGGAGGAACAGAATGGGATGTGTGAAAATGGGTTTAGGAATGCTTTGGTGAAGCGTATTGGGATCAGTAGAATTGATTCGTAA 882 0.4898 MDRIKGPWSPEEDDALQKLVDKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARILSGRTDNAIKNHWNSTLKRKCGSFMIDEPHLNPHPLKRSVSAGAAIPVSTVLFMNPSTPSSPSGSDVSESSVPVASSSHVYRPVPRTGGVLMETTSSSNDPPTSLSLSLPGVDSSSEVSNRVTELNVMHMLSPMMVAPVTVVAPVAVQEEKHDLKSVAPFNFSGELLRVMQEMIRKEVRSFMEEQNGMCENGFRNALVKRIGISRIDS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1314 293 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 215 - -
Lal23g1314 293 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lal23g1314 293 CDD SANT 7 49 IPR001005 -
Lal23g1314 293 MobiDBLite consensus disorder prediction 175 198 - -
Lal23g1314 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Lal23g1314 293 MobiDBLite consensus disorder prediction 142 162 - -
Lal23g1314 293 Pfam Myb-like DNA-binding domain 8 66 - -
Lal23g1314 293 Gene3D - 58 122 - -
Lal23g1314 293 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Lal23g1314 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Lal23g1314 293 CDD SANT 59 102 IPR001005 -
Lal23g1314 293 Gene3D - 4 56 - -
Lal23g1314 293 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Lal23g1314 293 PANTHER MYB PROTEIN-RELATED 2 215 - -
Lal23g1314 293 SMART sant 4 53 IPR001005 -
Lal23g1314 293 SMART sant 56 104 IPR001005 -
Lal23g1314 293 MobiDBLite consensus disorder prediction 142 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1314 Lal-Chr23 14046517 14047398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1314 1 292 MYB Transcription Factor Family AT4G37260 51.543 4.03e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal23g1314 Myb_DNA-bind_6 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1314 K09422 - gmx:778197 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal21g0220 21 1459975 1460814 Lal23g1314 23 14046517 14047398 ECH
Lal23g1314 23 14046517 14047398 Lal23g1314 23 14046517 14047398 ECH
Lal16g0235 16 1414366 1415464 Lal23g1314 23 14046517 14047398 LSH
Lal23g1314 23 14046517 14047398 Lal23g0896 23 11205254 11206384 PCT