Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1302 ATGTCGAAGGCGCGTGTCTACACCGACATCAATGTTCTTCGCCCCAAAGAGTACTGGGATTACGAGTCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAAGTTGTACGGAAAGTGGGAAGGGGGAAATATAGTGAGGTTTTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTGTAATCAAGATTCTCAAGCCTGTCAAGAAAAAAAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAGCATTCAAAAACTCCGAGCTTGATATTTGAGTATGTCAATAGTACAGATTTTAAAGTTCTATATCCGACCTTGACGGATTATGACATACGCTATTACATATATGAGCTCCTTAAGGCCTTGGATTACTGCCACTCTCAAGGCATAATGCATAGAGATGTCAAGCCCCACAACGTTATGATAGATCATGAGTTACGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTCCGTGTAGCTTCAAGATACTTTAAGGGCCCTGAACTTCTGGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCATGACCAGCTTGTAAAAATAGCGAGGGTGCTTGGGACTGACGAACTGAATGCATATCTGAATAAATATCATCTGGAGCTTGATCCTCAACTTGATTCACTTGTTGGACGGCACAGTCGCAAGCCCTGGTCTAAATTTATCAATGCAGATAATCAGCATCTTGTGTCTCCCGAGGCCATTGATTTTCTTGATAAGCTCCTTCGATATGATCACCAGGACAGGCTAACAGCAAGAGAAGCAATGGCTCATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACTCAGTAA 1002 0.4142 MSKARVYTDINVLRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCVIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIARVLGTDELNAYLNKYHLELDPQLDSLVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1302 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1302 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Lal23g1302 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Lal23g1302 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Lal23g1302 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Lal23g1302 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lal23g1302 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1302 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 333 IPR045216 GO:0004674|GO:0006468
Lal23g1302 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1302 333 SUPERFAMILY Protein kinase-like (PK-like) 9 323 IPR011009 -
Lal23g1302 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA-3 1 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1302 Lal-Chr23 13995192 13999581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1302 32 319 Core Cell Cycle Gene Families AT3G48750 33.333 8.60e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lal23g1302 Pkinase 4.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1302 K03097 - gmx:100819679 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1302 23 13995192 13999581 Lal23g1302 23 13995192 13999581 ECH
Lal16g0244 16 1451094 1455330 Lal23g1302 23 13995192 13999581 LSH
Lal15g1295 15 14759223 14766338 Lal23g1302 23 13995192 13999581 LSH
Lal23g1302 23 13995192 13999581 Lal15g1295 15 14759223 14766338 PCT
Lal23g1302 23 13995192 13999581 Lal16g1332 16 9621159 9629181 PCT
Lal15g1295 15 14759223 14766338 Lal23g1302 23 13995192 13999581 PCT
Lal16g1332 16 9621159 9629181 Lal23g1302 23 13995192 13999581 PCT