Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1297 ATGAAACCCACCTTCTTTATTATTATTACTATTATCTTCATCACTTCCACATTGTTTCTTTCCTTCACTAAAGGCCTCAACACCATTCTATTCCATTTCCACACCTCAATTTCAAATCATGAATCTCACACTATAAGATTCCTCCACCAACCTTTGTTCCCTGAAAGTTCTATTCCACCACCGTCAATCACCGACCCTCCGCCGACGGAAACAGGTACTCCGTCTTCTCACGATGGTAACATTCCATTCTTTTACGAGAATCCACCGGGCCCACCGCCACCTCCTCAATCAATATCAGTAACTTCCAACGCTTCACTCTCGAATTCGAACCCAACATCAACTCAACCTAACAATGGAACAAAGAAAGTTGCGATTGCGATCTCTGTTGGAATTGTCACTCTTGGAATGTTAACTGCACTCGCGTTCTTTATTTATAAGCACAAAGCCACACACCACGTGGAAACCCAGAAACTCATGACCCAAAACCCGAACCCGAATCCAGAGGATTCGATTGTTCTACCATCTTCTAGCATTCTCTACATTGGAACCGTTGAGCCTACGATAACGGAACCAAACGTTTCGCCGTATCAGAAGCTCAATTCCGTTAAGCGAACGGAACGGTACCGTCCGAGTCCTGAGTTGCATCCACTGCCGCCGTTGAGAAAGAATCCTCCCGACGGGAATTATCCTCCGGCGGCATCTCCGTCGTCTTCTGATGAGGAAAGTCACGTCACGACGGCGTTTCATTCACCGCAGAACTCTTCGGTGAGTTATGAGGACAGTTATTACACGCCGATTTCACGTCAGAGTTCTCTCGCTAACGTTAGCCCCGCCGCTGTCGCTGCTGCCACTGTACCACCACCACCTCCTCCACTTCCGTTGTCGAAGAGAACTTCCCCGAAGTCCCGCGTTTCAGCTTCGTCGCCAGATATAAGACATATCACAATTCCATCTATAAAGCAAACTCCACCGCCGCCGTCTCCGGCACCACTTGATAAACGAGCAAACTCCGGAAGTCCTAGAAGACCAAAGTTTTCATCTCCTCCGCCCCCTCCACCGCCACCGCCTCCTCCACCACCGATGTTCAAAGAGTGTTCAGGTGTTAGAATTTCTTGGTCACATGAGTCAAGAAAGGAAAAGTATTGTAGTTCAGGTGAAGGAGGAGGTAGTAGTAGTAGTAGTAGTGTAAAAAAAGGTTCAACTTCAGAGAATGTTGATAATAAAAATAATGTGAGTAAGAGTGTAGAAGGGAATGAGAAACCAAAGCTGAAAGCTCTACATTGGGACAAAGTTCGTGCTACCTCAGACCGTGATACTGTGTGGGACCACCTCAAATCTAACTCCTTTCAGTTAAATGAGGTCATGATGGAGTCTTTGTTTGGTTGCAATGCCACAAATTCTGTACCCAAAGAACCCATCAAAAACTCATTTTTTCCTTCCATTGATAAGGAGAACAGGGTTTTAGACCCCAAGAAGTCTCAAAACATTGCTATACTAATCAGGGCACTAAATGTCACAAGAGATGAGGTGTCCGAAGCTCTTTTAGATGGGAATCCAGAAGGTTTGGGTGCTGAACTATTGGAAACCCTAGTAAAGATGGCTCCTACTAAAGAGGAAGAGATAAAACTTAAAAATTATGATGGTGACCTATCAAAACTTGGATCTGCAGAAAGATTTCTTAAGTCAGTGCTTGATATCCCCTTTGCATTTAAAAGAGTTGAAGCTATGCTATATAGGGCCAACTTTGATGCAGAAGTTAATCACCTTAGAAAGTCTTTCCAAACCTTAGAGGCAGCAAGTGTGGAATTAAGGAACAGCCCGTTATTCTTCAAACTCCTTGAAGCTGTTCTCAGGACAGGAAACAGAATGAATGTCGGCACCAATCGAGGTGATGCTAAAGCATTCAAACTGGACACACTCTTGAAGCTTGTAGATATAAAAGGAACAGATGGAAAGACTACATTGCTCCACTTTGTAGTCCAAGAGATCATCAGATCCGAAGGTGCAGGTGGTGAATCAGCAAACAAGATTGTCAAGAGCCAAATGGATTCCACATTTAATGAGGATGAGTTTAAGAAGCAAGGATTGCATGTTGTGGCTGGGCTCAGTAGAGACCTCAGTAATGTAAAAAAGGCAGCAGGAATGGACTCAGATGTCTTAAGCAGCTACCTTTCAAAGCTTGAAACGGGGCTTGATAAAGTGAGGTTGGTTTTGCAATATGAGAAACCAGATGTACAAGGGAATTTCTTTAAGTTCACAAAACTATTTCTCAGAGATGCTGAAGATGAAATTGCTAGGATTAAGGCTGATGAGAGAAAGGCCTTATTCCTTGTGAAAGAAGTTACAGAATACTTTCACGGCGATACAGCAAAGGAAGAAGCTCACCCTCTCCGAATTTTTATGATTGTAAGAGACTTCCTAAATATTCTGGATCTAGTGTGCAAAGAAGTGGGTAGGATGCATGATAGAATTGTTGGTGGTTCTTCTACATCCTTTCGGATAGCTGCAACTGCATCATTGCCTGTTCTCAACAGGTACAATGCAAGACAAGATAGAAGCTCTGATGAGGAAAGCTCATCCCCCTAG 2586 0.4389 MKPTFFIIITIIFITSTLFLSFTKGLNTILFHFHTSISNHESHTIRFLHQPLFPESSIPPPSITDPPPTETGTPSSHDGNIPFFYENPPGPPPPPQSISVTSNASLSNSNPTSTQPNNGTKKVAIAISVGIVTLGMLTALAFFIYKHKATHHVETQKLMTQNPNPNPEDSIVLPSSSILYIGTVEPTITEPNVSPYQKLNSVKRTERYRPSPELHPLPPLRKNPPDGNYPPAASPSSSDEESHVTTAFHSPQNSSVSYEDSYYTPISRQSSLANVSPAAVAAATVPPPPPPLPLSKRTSPKSRVSASSPDIRHITIPSIKQTPPPPSPAPLDKRANSGSPRRPKFSSPPPPPPPPPPPPPMFKECSGVRISWSHESRKEKYCSSGEGGGSSSSSSVKKGSTSENVDNKNNVSKSVEGNEKPKLKALHWDKVRATSDRDTVWDHLKSNSFQLNEVMMESLFGCNATNSVPKEPIKNSFFPSIDKENRVLDPKKSQNIAILIRALNVTRDEVSEALLDGNPEGLGAELLETLVKMAPTKEEEIKLKNYDGDLSKLGSAERFLKSVLDIPFAFKRVEAMLYRANFDAEVNHLRKSFQTLEAASVELRNSPLFFKLLEAVLRTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRSEGAGGESANKIVKSQMDSTFNEDEFKKQGLHVVAGLSRDLSNVKKAAGMDSDVLSSYLSKLETGLDKVRLVLQYEKPDVQGNFFKFTKLFLRDAEDEIARIKADERKALFLVKEVTEYFHGDTAKEEAHPLRIFMIVRDFLNILDLVCKEVGRMHDRIVGGSSTSFRIAATASLPVLNRYNARQDRSSDEESSSP 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1297 861 MobiDBLite consensus disorder prediction 190 261 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 282 296 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 99 119 - -
Lal23g1297 861 Gene3D Formin, FH2 domain 407 821 IPR042201 -
Lal23g1297 861 MobiDBLite consensus disorder prediction 379 421 - -
Lal23g1297 861 PRINTS Proline rich extensin signature 204 216 - -
Lal23g1297 861 PRINTS Proline rich extensin signature 219 235 - -
Lal23g1297 861 PRINTS Proline rich extensin signature 270 291 - -
Lal23g1297 861 PRINTS Proline rich extensin signature 293 309 - -
Lal23g1297 861 PRINTS Proline rich extensin signature 313 330 - -
Lal23g1297 861 PRINTS Proline rich extensin signature 339 364 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 281 365 - -
Lal23g1297 861 SUPERFAMILY Formin homology 2 domain (FH2 domain) 350 820 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 232 261 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 212 231 - -
Lal23g1297 861 PANTHER FORMIN-LIKE PROTEIN 5 352 - -
Lal23g1297 861 PANTHER FORMIN-LIKE PROTEIN 346 861 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 343 363 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 58 119 - -
Lal23g1297 861 MobiDBLite consensus disorder prediction 298 315 - -
Lal23g1297 861 ProSiteProfiles Formin homology-2 (FH2) domain profile. 413 836 IPR015425 -
Lal23g1297 861 PANTHER FORMIN-RELATED 5 352 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lal23g1297 861 PANTHER FORMIN-RELATED 346 861 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Lal23g1297 861 SMART it6_source 413 825 IPR015425 -
Lal23g1297 861 MobiDBLite consensus disorder prediction 385 412 - -
Lal23g1297 861 Pfam Formin Homology 2 Domain 418 810 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1297 Lal-Chr23 13964165 13968807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1297 412 841 FH2 protein (formin) Gene Family AT3G25500 59.954 2.34e-166 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1297 - - gmx:100798670 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1297 23 13964165 13968807 Lal23g1297 23 13964165 13968807 ECH
Lal16g0254 16 1523382 1528161 Lal23g1297 23 13964165 13968807 LSH
Lal15g1310 15 15026419 15034156 Lal23g1297 23 13964165 13968807 LSH
Lal23g1297 23 13964165 13968807 Lal15g1310 15 15026419 15034156 PCT
Lal23g1297 23 13964165 13968807 Lal16g1324 16 9397001 9402008 PCT
Lal15g1310 15 15026419 15034156 Lal23g1297 23 13964165 13968807 PCT
Lal16g1324 16 9397001 9402008 Lal23g1297 23 13964165 13968807 PCT