Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1289 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCGCTGAAAGCTGGAGTAGTCAAACACGGGGCAGGAAAATGGCGCACTATACTTACAGACCCAGAATTCAGTTCTGTTTTGCGCATGCGTTCTAATGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAGGCAAAGCTTGCCCTTAAAAAGAACCTACCAACCCCCAAAATCGACAATATCCATATGTCCTCGAGTATTGTAGTTCACCGTGCCGAAGAAGTTGCTGTTACTAAGCCTTCAGCAGTTTCTGGTGGAACATCTTCTACTCCAAAAGAACAAATATCAAGGTTGGATACTCTTATATTAGAGTCTATTATCAAGTTGAAGGAGCCAAAGGGTTCTGATAGGGCTGCCATTACTACTTATATTGAGGATCAATATTGCTCTCCGCCGAACCTCGAAAAGTTACTATCAACAAAACTGAAGCATATGGTGGCAAGCGGCAAAATAGTGAAGGTAAAGCGTAAGTACATGGTTTCAACAAATCCATTAAGCTCTGAGAGAAGAAGATTCTCTTCTTCCTTACTCCTTGAAGGGAGGTCCAAAGATTCTCCTAAAGCAGAGAAGACTAGTATCAACAACCTTTCAAAATCCCAAATTGATGCAGAGTTATCAAAAATTAAAGGGTTGACCGCTCAAGAAGTGGCAAGCGCGGCTGCAAAAGCAGTTGCAGAGGCAGAAGCTGCTATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCACAAGTTTTTGCAAAGGCAGTAAAGAAGGCATTTAAATGCAAAAAACGTTATCCTTGA 879 0.4369 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSVLRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPTPKIDNIHMSSSIVVHRAEEVAVTKPSAVSGGTSSTPKEQISRLDTLILESIIKLKEPKGSDRAAITTYIEDQYCSPPNLEKLLSTKLKHMVASGKIVKVKRKYMVSTNPLSSERRRFSSSLLLEGRSKDSPKAEKTSINNLSKSQIDAELSKIKGLTAQEVASAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAVKKAFKCKKRYP 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1289 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lal23g1289 292 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 117 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal23g1289 292 SUPERFAMILY "Winged helix" DNA-binding domain 116 194 IPR036390 -
Lal23g1289 292 CDD SANT_TRF 6 57 - -
Lal23g1289 292 PANTHER MYB TRANSCRIPTION FACTOR 1 288 - -
Lal23g1289 292 SMART sant 4 59 IPR001005 -
Lal23g1289 292 SMART h15plus2 115 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal23g1289 292 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lal23g1289 292 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Lal23g1289 292 Pfam linker histone H1 and H5 family 122 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lal23g1289 292 Gene3D - 8 89 - -
Lal23g1289 292 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Lal23g1289 292 Gene3D - 115 195 IPR036388 -
Lal23g1289 292 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Lal23g1289 292 Coils Coil 240 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1289 Lal-Chr23 13922830 13928280 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1289 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 54.054 5.49e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lal23g1289 Linker_histone 8.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1289 K09422 - gmx:778165 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0197 15 1354152 1359289 Lal23g1289 23 13922830 13928280 LSH
Lal23g1289 23 13922830 13928280 Lal16g1317 16 9341790 9357133 PCT
Lal16g1317 16 9341790 9357133 Lal23g1289 23 13922830 13928280 PCT