Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1284 ATGCCCATGTATCAGCCTTGTAAGAGGGACATGGTTGTTGTTGGGTTTGAGGGTGGTGGTGATGGCCAGATTCTAGATCTGGATACTGCAGTCAAAGATGGTGTTTTGGGTGGTGTTGACGGTGTTATTGTGGGAACTGGGGTTTGTGACAAATTGGATCTGAGAAAATTGATTGAGGAGCTTGACTTATCAGAAGTCCCCACTGTCTTCATTTGCCCAATCTCCCTTGAGCCTATGCAAGACCCAGTAACCCTTTGCACTGGCCAAACCTATGAGAGGTCCAACATTCTCAAATGGTTCAGTTTGGGGCACTTTACATGCCCCACTACTATGCAAGAGCTTTGGGATGATTCCATTACTCCAAACACCACCCTTTATCGTTTGATATACACTTGGTTCTCTCAAAAGTATTTGCTCATGAAGAAGAGATCAGAGGATGTGCAAGGAAGGGCTTCAGAGCTTCTCGAAACCCTGAAGAAGGTTAAGGGTCAAGCTAGAGTTCAAGCACTCAAGGAGCTTCACCAAGTTGTGTCTGCTCATTCCACTGCCCGTAAGACAGTGATTGATCATGGTGGAGTAGCTATTATGTCCTCATTACTTGGCCCTTTTACTTCACATGCTGTTGGTTCTGAAGTCATTGGTATTCTTGTAAGTTTGACACTTGATTCAGAATCCAAAAAGAATTTAATGCAACCTGCTAAAATTTCATTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACTAAAATCAATTGCACGCGGTTGATGGAATCGTTAATTGATGATAAGGATTTTCGTTCAGAGATTATCTCAAGCCATAGCCTATTGGTTGGGTTAATGAGGCTTGTGAAGGATAAGAGAAGAAGCAATGGAATCTGTTCAGGACTAAGCCTTCTCAAAACAATATCATTGCATAATGAAGTTAGGAATTTGCTAGTGAGCATTGGGGCTGTTTCTCAATTGGTTGAATTGTTGTCTGGTTTGGAACCTGATTGTTTGGAATTAGCCCTTTGTGTTTTAGATGCATTGGCATCTATATCCGAAGGCCGAGTTGCTTTGAAAGATTGTTCTAACACCATACCCATCATGGTGAAATTGTTGATGAGGATCTCAGAGAACTGCACCCAATATGCATTGTCAATCTTGTGGTCTGTGTGCGAGCTTGCACCTGAGGAGTGTTCATCCATTGCTGTGGATGCAGGGCTTGCTGCGAAACTTCTCCTTGTTATTCAAAGTGGTTGCAATCCTGTATTGAAACAACAGTCTTCTGAGCTTTTGAAACTGTGTAGTTTAAATTATTCAGATACCATCTTCATTTCCAAGTGCAAGCTCACCAGAACCATCCAATGA 1353 0.422 MPMYQPCKRDMVVVGFEGGGDGQILDLDTAVKDGVLGGVDGVIVGTGVCDKLDLRKLIEELDLSEVPTVFICPISLEPMQDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELLETLKKVKGQARVQALKELHQVVSAHSTARKTVIDHGGVAIMSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKINCTRLMESLIDDKDFRSEIISSHSLLVGLMRLVKDKRRSNGICSGLSLLKTISLHNEVRNLLVSIGAVSQLVELLSGLEPDCLELALCVLDALASISEGRVALKDCSNTIPIMVKLLMRISENCTQYALSILWSVCELAPEECSSIAVDAGLAAKLLLVIQSGCNPVLKQQSSELLKLCSLNYSDTIFISKCKLTRTIQ 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1284 450 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Lal23g1284 450 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Lal23g1284 450 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Lal23g1284 450 Gene3D - 139 444 IPR011989 -
Lal23g1284 450 SUPERFAMILY ARM repeat 153 434 IPR016024 -
Lal23g1284 450 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Lal23g1284 450 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 40 449 - -
Lal23g1284 450 SUPERFAMILY RING/U-box 60 136 - -
Lal23g1284 450 PANTHER WDSAM1 PROTEIN 40 449 IPR045185 GO:0061630
Lal23g1284 450 CDD RING-Ubox_PUB 70 112 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1284 Lal-Chr23 13899143 13900495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1284 1 450 U-box Gene Family AT3G49810 73.556 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1284 - - gmx:100779827 775.778