Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1279 ATGGCGGAAACAAACGAAAACGTTTCGAAAGAAACTGTGAAGGAATACGAATTTGAAGACTCGGAGGACCAAAGTTTCGAAGACCTTGGACTCGACGCTCGTCTTGTTCGTGCTTTACTTAAGAAGGGAATCGATAAATCCACTCCGATTCAGCGCGTCGCAATTCCACTCATATTGGAAGGTAAAGATGTGGTCGCTCGAGCCAAAACGGGTTCTGGAAAGACCTTTGCTTATCTTCTTCCATTGCTTCAGAAATTGTTTACTAATAATGCTGACAGAAAGAAACTAGCACCCAATGCTTTTATTCTTGTCCCCACTCGCGAATTGTGTCAACAGGTATACAATGAGGTCTTATCAATCCTTGAGTTGTGCAGAGTTCAATTAAAAGTTGTGCAATTGAATAGCAATATGTTGCATTCTGACTTGCGGGCAGCACTCACTGGACCCCCGGATGTTTTGATCTCCACGCCTACTTGTGTACAAAAGTGCTTGTCTAGTGGAGTACTTCAAGGGGCATCCATTAATAGTTCACTTGAAACTCTAGTCCTTGATGAGGCCGATCTTCTATTATCATATGGTTATGAGAATGACATAAAAGCTTTTACACCCCATATTCCCAGAAGTTGTCAGTGTCTTCTTATGTCAGCAACATCAAGTGCTGATGTTGATAAACTGAAGAAGCTGATTCTACACAACCCCTTTATTTTGACTTTGCCTGAAGTGGGAAACCATAAGGATGACATCATCCCTAAAAATGTTGAGCAGTTCTGGATCCCATGTGCTGAGCGTGATAAGTTGCTTTACATCCTTTCTGTCTTGAAACTGGAGTTGGTCCAAAAGAAAGTTTTGGTATTCACTAATACCATAGACACGAGTTTCAGATTGAAACTGTTTCTGGAAAAGTTTGGGATCAAGTCTGCTGTTTTGAATGCTGAGTTGCCGCAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTATTCGATTATCTAATTGCAGCTGATATTAGCCTGTCAAAGGAGAAGGATGAAGCAGCTAAGGAAAATAATGGTGGATCAAGGAAGTCTAGAAAATTTGCTAAGCACAAATTAGATTCTGAATTTGGAGTAGTAAGAGGGATTGACTTTAAAAATGTATACACGGTGATAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCAATCTCTCTGGTTTCTCCAGATGAGATGGATACTTTAGGAGAAATAAGATCTTTTGTTGGGGATGATGAGAAGAATGGCTCAAACACCATTGCCGAGTTTCCCTTGCTCACCAAGAATGTGGTTGAATCCTTGCGGTATAGGGCTGAGGACGTGGCAAAGAGCGTAACCAAAATTGCTGTCCGAGAATCACGAGCTCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAGGCCCATTTTGAATCTAAACCAAGGGAACTAGATCTATTGAAGCATGACAAGCTTTTGAGCAAGAATGCCCCTCCTACACACCTACGTGATGTTCCTGACTACTTATTAGATAAAACAACAAAAGAGGCCAAGCAAATGGTTAAGCTTGCAAGGGATGCAATGGGAAATAATAATCATCGCCACCGGGGACCCAAGAGAAAAACTAGAAAAGATGCTGACCCTTTGAAGGCCATCTCTTCCTCGTTGAACTAA 1725 0.4133 MAETNENVSKETVKEYEFEDSEDQSFEDLGLDARLVRALLKKGIDKSTPIQRVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNADRKKLAPNAFILVPTRELCQQVYNEVLSILELCRVQLKVVQLNSNMLHSDLRAALTGPPDVLISTPTCVQKCLSSGVLQGASINSSLETLVLDEADLLLSYGYENDIKAFTPHIPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDDIIPKNVEQFWIPCAERDKLLYILSVLKLELVQKKVLVFTNTIDTSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIAADISLSKEKDEAAKENNGGSRKSRKFAKHKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGASISLVSPDEMDTLGEIRSFVGDDEKNGSNTIAEFPLLTKNVVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFESKPRELDLLKHDKLLSKNAPPTHLRDVPDYLLDKTTKEAKQMVKLARDAMGNNNHRHRGPKRKTRKDADPLKAISSSLN 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1279 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 55 236 IPR014001 -
Lal23g1279 574 Gene3D - 242 445 IPR027417 -
Lal23g1279 574 CDD SF2_C_DEAD 253 416 - -
Lal23g1279 574 Pfam Helicase conserved C-terminal domain 264 407 IPR001650 -
Lal23g1279 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 237 IPR027417 -
Lal23g1279 574 Gene3D - 1 238 IPR027417 -
Lal23g1279 574 SMART ultradead3 43 256 IPR014001 -
Lal23g1279 574 Coils Coil 477 497 - -
Lal23g1279 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 453 IPR001650 -
Lal23g1279 574 PANTHER RNA HELICASE 13 505 - -
Lal23g1279 574 Pfam DEAD/DEAH box helicase 48 225 IPR011545 GO:0003676|GO:0005524
Lal23g1279 574 MobiDBLite consensus disorder prediction 542 574 - -
Lal23g1279 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 24 52 IPR014014 GO:0003724
Lal23g1279 574 CDD DEADc_DDX56 31 238 - -
Lal23g1279 574 SMART helicmild6 293 407 IPR001650 -
Lal23g1279 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 432 IPR027417 -
Lal23g1279 574 PANTHER ATP-DEPENDENT RNA HELICASE DDX56-RELATED 13 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1279 Lal-Chr23 13868199 13875446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1279 25 447 Eukaryotic Initiation Factors Gene Family AT3G19760 25.296 9.62e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1279 K14810 - gmx:100800749 923.694