Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1277 ATGGGAAGGGTTCCTTGCTGTGACAAAGCCAACGTTAAGAAAGGACCATGGTCATCTGAAGAAGACACCATACTCAAAGCTTATATTGAGCAACAAGGTACTGTTGGCAACTGGATAGCCCTGCCCCAGAAGATAGGCATCAAGAGATGTGGTAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGCCCAAACATTAAACATGGCGGTTTCTCAGAAGAAGAAGATAACGTAATTTGCAGCCTCTATGTTAGTATTGGAAGCAGGTGGTCAATTATAGCAGCTCAATTACCAGGGCGCACAGATAATGATATAAAGAACTACTGGAATACTAGGCTTAAGAAGAAGCTCAATGTGAATCTAAGAAAGCATCAGCAGGCTCAAACTCGTAGAGTCACCAACCTCAAACAAGAGATCAAAAGAGAACCCGAAAATTTTGCGGTGGCTCCTGGAGTTGTCACCCAAACTTCATATTGGCCTGCAGAGCATAATTCTATGCATATGCAAATGGCAAATAATACTGCTCCCATTCAACACTGTGATCTCAACAACCAAACATTCTTCAGGAACTTGTTGCTTAACAACAACGCCGTCACAGCCACCTTTAATTCACAAGTTGCATGTGACGCTTCCTTCAAACAAGAGCAACAGATTTATCCAATCACAATGAACATGATAAACCCATTCAATAGTGGCAGTGGCACTTGTCCGTCATCAAATATATTTCAAGGGTTTGAAAATTTCCCAAATGATTTGAGTGAGTTGGTCTGTGTAAACCCGCAACAAATAGATGGATCAACGCAAGGCTTTTATGGGATGGAATCCATGGACATGATAAATAACAATGGTAGCACAAATACCATTTCAACAGAAAGCACTAGTTGGGGAGAAATGAACTCTTTGGTTTACTCACCTTTGGTTTCTGACTATGAAGGTTGTGCACAGGGAGTTCCTCAAGATATCACTTTTGACGAGTCTAGGTACTTTGGAATTTATATGCAATAA 1005 0.409 MGRVPCCDKANVKKGPWSSEEDTILKAYIEQQGTVGNWIALPQKIGIKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNVICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLNVNLRKHQQAQTRRVTNLKQEIKREPENFAVAPGVVTQTSYWPAEHNSMHMQMANNTAPIQHCDLNNQTFFRNLLLNNNAVTATFNSQVACDASFKQEQQIYPITMNMINPFNSGSGTCPSSNIFQGFENFPNDLSELVCVNPQQIDGSTQGFYGMESMDMINNNGSTNTISTESTSWGEMNSLVYSPLVSDYEGCAQGVPQDITFDESRYFGIYMQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1277 334 CDD SANT 71 113 IPR001005 -
Lal23g1277 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal23g1277 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal23g1277 334 Gene3D - 7 68 - -
Lal23g1277 334 CDD SANT 16 62 IPR001005 -
Lal23g1277 334 Gene3D - 70 143 - -
Lal23g1277 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lal23g1277 334 SMART sant 13 64 IPR001005 -
Lal23g1277 334 SMART sant 67 115 IPR001005 -
Lal23g1277 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lal23g1277 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lal23g1277 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lal23g1277 334 PANTHER OS09G0431300 PROTEIN 1 318 - -
Lal23g1277 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal23g1277 334 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1277 Lal-Chr23 13841440 13843332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1277 1 304 MYB Transcription Factor Family AT3G49690 45.317 4.78e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal23g1277 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1277 K09422 - gmx:106795158 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0204 15 1411159 1413161 Lal23g1277 23 13841440 13843332 LSH