Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1272 ATGGATTCTTTTGATGATCTCGATTTGGATTATTTCTATGATCATCAGTACTTCAACTCCGAAAGCAATCAACAGTGTTTCCCACTTGGATGTGCTGATAGCTCCATTCAAACATTGAGTCCCAACAACACTTTTGCAAGTGGCTTTATGGCTCCCAAGGACTCTAATTCTGCCTCTCTAACCAACTCCCAAATTATTTCTTTTCAGTCCTTCAAGGCTCCAGCATTTGCTTCCCATCAATTTTACAACCTACAAAATTCTGATGTGAAGTCTAAGGTTGCTACATTTGCTAGGAACACAAGCCAAGCCCAAGGACACGTGGCAGCCGAAAGAAAACGAAGGGAGAAGCTCACTCAGAAGTTCATTGCTCTCTCGGCAATCGTTCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTAGGAGATGCCATCAAGTATGTGAAACAACTACAAGAACGCGTGCAGACTCTAGAGGATTGTGCAGCCCAGAAAAAAACTGAATCAGCATTCTTGGTAAAGAGATCTATTCTCATTTTCGAGGATGATGATAGCAACGAATGTTCTATGAGTAACTGTGACCAGCCACTCCCTCATATTGAAGCAAGAGTTTCTGGTAAAGATGTACTCATCAGAATCAACTGCGACAAACATAGTGGCTGTACTTCAACAATACTTGGCGAATTAGACAAATATCATCTCACTGTCCAGGGTAGCAGCTTTTTGCCCTTCGGGAATAACATTCTTGATATAACTATAGTCGCTCAGATGAACCAGGGAAGCTGCATGACACCAAAGGATCTCATAGAGAGCCTACGCCAATCTTTGAGAGCGTTCTATATAACCACTTAA 849 0.424 MDSFDDLDLDYFYDHQYFNSESNQQCFPLGCADSSIQTLSPNNTFASGFMAPKDSNSASLTNSQIISFQSFKAPAFASHQFYNLQNSDVKSKVATFARNTSQAQGHVAAERKRREKLTQKFIALSAIVPGLKKMDKASVLGDAIKYVKQLQERVQTLEDCAAQKKTESAFLVKRSILIFEDDDSNECSMSNCDQPLPHIEARVSGKDVLIRINCDKHSGCTSTILGELDKYHLTVQGSSFLPFGNNILDITIVAQMNQGSCMTPKDLIESLRQSLRAFYITT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1272 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 171 IPR036638 GO:0046983
Lal23g1272 282 SMART finulus 107 156 IPR011598 GO:0046983
Lal23g1272 282 PANTHER BHLH TRANSCRIPTION FACTOR 48 278 - -
Lal23g1272 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Lal23g1272 282 Gene3D - 94 167 IPR036638 GO:0046983
Lal23g1272 282 Pfam Helix-loop-helix DNA-binding domain 105 151 IPR011598 GO:0046983
Lal23g1272 282 PANTHER TRANSCRIPTION FACTOR NAI1 48 278 - -
Lal23g1272 282 Coils Coil 147 167 - -
Lal23g1272 282 CDD bHLH_AtNAI1_like 101 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1272 Lal-Chr23 13807088 13811050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1272 79 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 49.261 1.75e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g1272 HLH 4.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1272 - - gmx:100791810 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1272 23 13807088 13811050 Lal23g1272 23 13807088 13811050 ECH
Lal16g0845 16 5478763 5484501 Lal23g1272 23 13807088 13811050 LSH
Lal15g0816 15 5968794 5971856 Lal23g1272 23 13807088 13811050 LSH
Lal23g1272 23 13807088 13811050 Lal15g0816 15 5968794 5971856 PCT
Lal15g0816 15 5968794 5971856 Lal23g1272 23 13807088 13811050 PCT