Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1271 ATGGCTGGTTTAGATTTAGGTACAGCTTCACGCTTTGTTCAAAATCTCCACAGACCAGACTTCAACTTGCAACAGCAGCAACAACAAACCGAATCAGAAGAAGACGGAAACCAAGGTGATCTATATGAAGATGGACCTCACCAAGGGCTCGAACCCGGCTCCGGGGGTGACGTTATCACGCGCCGCCCACGTGGCCGTCCAGCTGGCTCCAAGAACAAACCCAAACCTCCGGTGATCATAACAAAGGAAAGCGCCAACACGCTGAGGGCTCATATTCTCGAAGTCGGCAACGGATGCGACGTTTTCGACTGCGTCGCCACCTACGCGCGGCGTCGCCAGCGCGGGATCTGTATCCTCAGTGGTAGCGGCACCGTCACCAATGTCAGCTTACGGCAGCCGGCAGCGGCTGGATCCGTCGTCACCCTCAACGGAAGGTTCGAGATTTTGTCACTCTCCGGATCCTTCCTTCCGCCGCCTGCTCCGCCGGGGGCGACGAGCCTAACCATATACCTTGCCGGTGGGCAGGGACAGGTGGTGGGAGGGAGTGTGGTTGGAGAGTTGACCGCAATTGGGCCTGTGATTGTGATTGCTGCTTCCTTCACCAACGTGGCTTATGAGAGGTTACCTTTGGATGAAGAAGAAAACCTTCAGATACAACCACCTGGTCAAGATGGTGGTCACGTTTCTAGTGGCAGTGTAGGGAATAACAACCAATTTCCGGACCCATCATCAGGGCTGCCGTTCTTTAATTTGCCGAATGTTCAGTTGCCAGTGGATGGATGGGTGGGAAACTCAGCTGCACATGTGTTTCTTTCTTCTCTTTTCCCTAATACTCAAGGTCATCGACATGAATATGATTATCACATTGAGTTTGCAATTCTACTCAATGTGAGACTCTTAACATTATCTCTCCCTTTATGGATCGACGTCCATGATGGTTTTTACTCTATCGACATTGACTTGATGATAGTCATTTCCCTTTTGGTGGTTTCACTTACTTATCAGTATTCGGTAGCCATTTATGTAGCACAACTATCAATGAAAACATCAATTGTCAGGACTTAA 1065 0.5005 MAGLDLGTASRFVQNLHRPDFNLQQQQQQTESEEDGNQGDLYEDGPHQGLEPGSGGDVITRRPRGRPAGSKNKPKPPVIITKESANTLRAHILEVGNGCDVFDCVATYARRRQRGICILSGSGTVTNVSLRQPAAAGSVVTLNGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAIGPVIVIAASFTNVAYERLPLDEEENLQIQPPGQDGGHVSSGSVGNNNQFPDPSSGLPFFNLPNVQLPVDGWVGNSAAHVFLSSLFPNTQGHRHEYDYHIEFAILLNVRLLTLSLPLWIDVHDGFYSIDIDLMIVISLLVVSLTYQYSVAIYVAQLSMKTSIVRT 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1271 354 ProSiteProfiles PPC domain profile profile. 85 222 IPR005175 -
Lal23g1271 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 267 IPR014476 GO:0003680
Lal23g1271 354 MobiDBLite consensus disorder prediction 222 236 - -
Lal23g1271 354 MobiDBLite consensus disorder prediction 216 236 - -
Lal23g1271 354 CDD DUF296 89 172 IPR005175 -
Lal23g1271 354 MobiDBLite consensus disorder prediction 15 35 - -
Lal23g1271 354 MobiDBLite consensus disorder prediction 15 78 - -
Lal23g1271 354 Gene3D - 88 221 - -
Lal23g1271 354 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 267 - -
Lal23g1271 354 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 219 - -
Lal23g1271 354 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 202 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1271 Lal-Chr23 13800978 13802998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1271 1 265 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 66.102 5.01e-95 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1271 - - jre:108994023 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1271 23 13800978 13802998 Lal23g1271 23 13800978 13802998 ECH
Lal15g0820 15 6038258 6039818 Lal23g1271 23 13800978 13802998 LSH
Lal23g1271 23 13800978 13802998 Lal15g0820 15 6038258 6039818 PCT
Lal23g1271 23 13800978 13802998 Lal23g0783 23 10348300 10350534 PCT
Lal15g0820 15 6038258 6039818 Lal23g1271 23 13800978 13802998 PCT
Lal23g0783 23 10348300 10350534 Lal23g1271 23 13800978 13802998 PCT