Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1269 ATGCCAGTTCCACTTGCTCCTTATCCCACAACCCCAGCTCCATATTCACCTACAACAAATGGCCCTCAGAGTCAACTTGTCTGTTCTGGATGTAGAATTCTCCTTATGTATCCAATTGGAGCCACATCTGTGTGCTGTGCTGTTTGCAACGCGGTCACAGCAGCGCCACCCCCTGGAACAGAAATGGCCCAGCTAGTTTGTGGAGGCTGTCACACTTTACTAATGTACATCCGTGGCGCAACAAGTGTTCAATGTTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGAAAGTGAATCTGTACAATACATATATGGACAAAGGTTCTCAGAGTCATACTTTGTGACTAAGCATCAAATGTATGTGCATTGTAACAGCAAATCAAGTGGCACATGTCAACTGTGGGAACTGCCTCAGCAAGCACCATTGAGCAGAAACTCAGCACCTAAATTTTACTGTAGAAGTCATCACAGACTCCACAACCTTGGTTTTGTTAGTAACATATCTCCCTAG 513 0.4464 MPVPLAPYPTTPAPYSPTTNGPQSQLVCSGCRILLMYPIGATSVCCAVCNAVTAAPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEESESVQYIYGQRFSESYFVTKHQMYVHCNSKSSGTCQLWELPQQAPLSRNSAPKFYCRSHHRLHNLGFVSNISP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1269 170 MobiDBLite consensus disorder prediction 1 16 - -
Lal23g1269 170 PANTHER PROTEIN LOL1 1 98 - -
Lal23g1269 170 MobiDBLite consensus disorder prediction 1 22 - -
Lal23g1269 170 Pfam LSD1 zinc finger 28 52 IPR005735 -
Lal23g1269 170 Pfam LSD1 zinc finger 67 91 IPR005735 -
Lal23g1269 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 53 IPR005735 -
Lal23g1269 170 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Lal23g1269 170 PANTHER PROTEIN LSD1 1 98 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1269 Lal-Chr23 13779364 13781466 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lal23g1269 zf-LSD1 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1269 - - cit:102618163 165.236
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0849 16 5518220 5520370 Lal23g1269 23 13779364 13781466 LSH
Lal15g0823 15 6059187 6062280 Lal23g1269 23 13779364 13781466 LSH
Lal23g1269 23 13779364 13781466 Lal15g0823 15 6059187 6062280 PCT
Lal23g1269 23 13779364 13781466 Lal23g0780 23 10331397 10334787 PCT
Lal15g0823 15 6059187 6062280 Lal23g1269 23 13779364 13781466 PCT
Lal23g0780 23 10331397 10334787 Lal23g1269 23 13779364 13781466 PCT