Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1268 ATGGGTCGCACGGTGAGGGAAAAACACATCCAAGCCAATCGCAAATCTCGATCACAGAAACCCGATTCCAATTCTAATTCTCGCTCTAAGTCCATTATGAACCACGTGGATGTGACTCCCAAACATTCTTCTTCAAATCCAAATCCTAATGTTGCTTCATCTGAATGGGGATTATGCACCGTGGATCAATTGGAACATATTTTATTGAAAAACATGGAAATTATATACATAGATGCTGTTTCAAAGCTTGTTACTTTAGGGTATGAGGAGGATGTAGCCCTAAGAGCCATACTGCGTAATGGTCATTATCACGGTCCAATGGATGTGTTAACAAACATTTTACACAACACATTGGGTTATTTGAGTAATGATGAATCTGATTCCGAGTCTGAGTCCGAGTCTGAGTCTGAGACTGTTTTCACTGACTTGAAGCAGTTAGTGCGGTATTCGCTAGCCGGTATGGTGTCTTTGTTGCAGCAATTGAGGCCTAATTTGAGTAAAGGTGATGCCATGTGGTGTTTACTCGTCACTGATTTCCATATAGAGAAGGCAACCAATATTCAAATTCCAGTTTCCGATGACAATGTCGTTGAGACTGGTAGTGGTGATAATTTTAACAATGTATTTGGTGTTATGCCTCCGCCTCCATGTAGGTTTCATGGTGGATGGGGGTTTGGAAATGGTGGAACCTCACAGATGACTTTACAGTTACAAAGAGATATTGAATTCCCAAAGAGGTTTAACCTTTCTCCTCAGATGAAGTCCATGTTGAAAAGAAATGTCGCGATGTTCGCTGCTGGTTTTAGGGCCAACTCTAACCAGTTACATCCCAAAGCTGTTCCTAGCAGTAGCAATGCATCATCAAATTTTGAGTCTCCATCTGAGAAGTCTGGTGACTCCCACAATCTGAATGACCTAGATGCTGTGAACTCGGTGTTGTTGAGCAAGTTTCGTGATCTAAATCTTGACGAGAAACTGGATTTTGTGGCCGAAGATAAGAAGGGTGAGGTGATAGTCAATCTGTTCCGTCAGATTAAGGATCTTGAGAAACAGGTCAAGGATCGAAAAGAATGGGCTCATCAGAAGGCAATGCAAGCAGCAAGAAAGCTGAGTGGAGATCTCACTGAGCTGAAAACATTAAGGATGGAAAGAGAGGAGACCCAACGATTGAAGAAAGGGAAGCAGACACTTGAGGGTACAACCATGAAAAGACTCTCAGAGATGGAGAGTAACCTGAGAAAGGCTAGTGGTCAAGTGGACCATGCAAATGCTGCTGTCAGAAAACTAGAGATAGAGAATGCAGAAATCAAAGCAGAGATGGAGGCTTCTAAATTAAGTGCATCAGAGTCAGTCATGGCCTGCCTGCAAGTTGCAAAAAGGGAGAAAAGGTGCTTAAAGAAGCTTCTAGCGTGGGAAAAACAGAAAGCTAAGCTTCAGCAGGAGATTTCTGATGAAAAACAGAAGATATCAGAGATACAAGAAGAATTGGCTCAGATTAAGAAGTGTCAAAAAGAAGCTGAGGTCAAGCTAGGGGAGGAGTTGAAGGCTAAGGAGGAAGCATTAGCACTAATTGAGGAGGAACGCCATGCTAAGGAAGCAGCTGAGGCTAATAATAAGAGAAATCTTAAAGCTTTACGCCATAACATAGAGATAGATTTCAAGCGCCGCAAGGATGATATCTTAAGGCTTGAGCAGGAGTTGGCACGCCTTAAAGCATCTGCTCAGTCTGATAAGCTGCATCATAAATCAAATACTTCACGTGCAAGTGAATCTGAGTGTGCAAAGCTCCCAAGAGAGACAATTGTTAAGCTTCTTCAAGACTTGGATAATCTGGAGGATTTTTCAGAAAAAGAAGTCAGCGGTGATAGACAGTGCATTATATGCAAGAAAGGTGAAGTTTCAGTTGTCTTCTTGCCGTGTGCACACCAAGTCATGTGTGCTAATTGTGGTGAAGAGTATGGGAGAAAGGGTAGAGCTGCTTGTCCATGCTGCCGAGTTCCAATCGAACAGAGAATCCATGTCTTTGGGGCAAGTTCGTAG 2040 0.427 MGRTVREKHIQANRKSRSQKPDSNSNSRSKSIMNHVDVTPKHSSSNPNPNVASSEWGLCTVDQLEHILLKNMEIIYIDAVSKLVTLGYEEDVALRAILRNGHYHGPMDVLTNILHNTLGYLSNDESDSESESESESETVFTDLKQLVRYSLAGMVSLLQQLRPNLSKGDAMWCLLVTDFHIEKATNIQIPVSDDNVVETGSGDNFNNVFGVMPPPPCRFHGGWGFGNGGTSQMTLQLQRDIEFPKRFNLSPQMKSMLKRNVAMFAAGFRANSNQLHPKAVPSSSNASSNFESPSEKSGDSHNLNDLDAVNSVLLSKFRDLNLDEKLDFVAEDKKGEVIVNLFRQIKDLEKQVKDRKEWAHQKAMQAARKLSGDLTELKTLRMEREETQRLKKGKQTLEGTTMKRLSEMESNLRKASGQVDHANAAVRKLEIENAEIKAEMEASKLSASESVMACLQVAKREKRCLKKLLAWEKQKAKLQQEISDEKQKISEIQEELAQIKKCQKEAEVKLGEELKAKEEALALIEEERHAKEAAEANNKRNLKALRHNIEIDFKRRKDDILRLEQELARLKASAQSDKLHHKSNTSRASESECAKLPRETIVKLLQDLDNLEDFSEKEVSGDRQCIICKKGEVSVVFLPCAHQVMCANCGEEYGRKGRAACPCCRVPIEQRIHVFGASS 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1268 679 Coils Coil 405 446 - -
Lal23g1268 679 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 678 - -
Lal23g1268 679 MobiDBLite consensus disorder prediction 1 30 - -
Lal23g1268 679 Pfam Family of unknown function (DUF6592) 71 185 IPR046527 -
Lal23g1268 679 MobiDBLite consensus disorder prediction 1 16 - -
Lal23g1268 679 Coils Coil 461 537 - -
Lal23g1268 679 Pfam Zinc finger, C3HC4 type (RING finger) 622 670 - -
Lal23g1268 679 SUPERFAMILY RING/U-box 603 671 - -
Lal23g1268 679 Coils Coil 553 573 - -
Lal23g1268 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 676 IPR013083 -
Lal23g1268 679 PANTHER OS05G0141500 PROTEIN 1 678 IPR046934 -
Lal23g1268 679 ProSiteProfiles Zinc finger RING-type profile. 625 665 IPR001841 -
Lal23g1268 679 MobiDBLite consensus disorder prediction 275 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1268 Lal-Chr23 13773186 13776531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1268 625 675 C3H Transcription Factor Family AT1G73950 43.137 5.29e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0285 16 1700427 1703759 Lal23g1268 23 13773186 13776531 LSH
Lal15g0827 15 6117941 6123586 Lal23g1268 23 13773186 13776531 LSH
Lal23g1268 23 13773186 13776531 Lal15g0827 15 6117941 6123586 PCT
Lal23g1268 23 13773186 13776531 Lal23g0778 23 10297790 10303809 PCT
Lal15g0827 15 6117941 6123586 Lal23g1268 23 13773186 13776531 PCT
Lal23g0778 23 10297790 10303809 Lal23g1268 23 13773186 13776531 PCT