Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1264 ATGGTTTGCACTGCCAATGATTTACAGGGATGGAAAGATTTTCCAAAGGGACTTAAGGTTCTTCTCCTTGATGGAGACATAAATTCTGCTGCTGAGACAAAAGCGAAGCTTGAGGCTATGGACTATAATAACCAACTTAGAGCCTTTTGCCATGGGCCAAAAGATGCCTCTCGCCATGGGTTAAAGTTATCCACATGCTTGTTTATTCCATTCGCTCTATTCCTGCACCCTATCCCTTCCTGTTTCCTGTGCATGCTTGTTTATTCCATTACTGTTTTAAGTAAGCCTCCATACTTCGGTACAGTTTCTTCCTTCTCTGATGAGAATGAAGCCTTGTCAGCATGCTCAAGTAGGCCTCAAGACTTCCATGTTGCCGTAGTGGAGGTGAGTACTAGCAGTAGCCAGGGAGGTTTCAAGTTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCAAAAACACATTGCCTGAGCACCATGATGAAGTGTATTGCGTTGAATTCCTCAATAAACCACTCTCGGAGGACAATCTCAGAAATATCTGGCAGCATGTGGTTCATAAGGTCAGTTAATATTGTGACATTATATTGGCAACTTGGCATTTACTATTACCATAATATGAACAAAATAGTTTCTGATGTGGTTGAAATCAAGCAGGCATTCAATGCTGGGGCAAGTGTCCTGCCTGAATCACTAAAACCTGTCAGAGAATCTGTAGAACCCGTGTTGCAGCTTCAAACAGAAAATGGACAACGTGAAAGTAAAATGTTGATAGATGTAGATAATGTGTCCAAGTTTAGTTATAATGACCATGAGCATATTACTGGAAGTGATAAATATCCTGCTCCTTCAACCCCACAATTAAAACAAGGGGAACGGTTGCTTGATGGTGGGGATTGCCAAGATCAGACAAATTGCTCCACAGAAAAGGAAAGTGGAGAACATGATGAGGACTCTAAATCTGTCGACACTTCATGTGAGAATTTGAACACTGAAAGTACTACTCAACCAATAATACCTGAAAAGACTCCTATCAAGGGGGAAGAAGATATTGCTGATGGTTGCAAAGGTGAGATTGTTGTTTCTCTGAATCCACATAATAGAAATCTCAGCAAGGCAGGTGGTAATTCTACATCTCCAAATAAAGCGAGTGTTAGAGATTCTTGTGAGATTAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACACCTGAGCTGCACAAAAAGTTTGTGCATGCAGTCGAACAACTAGGTGTTGATCAAGCCATTCCCTCTAGAATATTGGAGCTAATGAAGGTGGAAGGCTTGACTAGGCATAATGTGGCAAGTCATCTTCAGAAATATAGAATACAAAAGAGACAAATTGTTCCCAGGGAAGAAGATCGAAGATGGACAAATCGAAGAGATCAAATGCAAAGGAGCTATTGTGCACAAAGACCAATTATGGCTTATCCTCCATATCATTTTAACCACACCCTTTCTTCACCTCCTGCGTATCCTATGTGGGGACAACCTGGCAACCAAACAGCTGGTGTTCGGGTTTGGGGCCCTCTTGGTTATCCCCTCTGTCAGCCTTTTCCAACGGTGCATGCGGATGCATGGGGTTTCCCAAATATGGTTGGATTGCACAATGCCAAAGCAGTGGATTATAGATTTGACCTGCCACAAAATTCCTTCGAGCATCATCCGGCAGAGGAGGTTGTTGACAAGGTTGTGAAGGAAGCAATGAACAAGCCATGGCTCCCCCTGCCTTTAGGCCTCAAACCGCCTTCGGCGGATAGTGTGTTGGCTGAGCTTTCTAAACAAGGCGTATCCAACATCACAAAAGATTCAAGTTTGTCATGA 1848 0.4275 MVCTANDLQGWKDFPKGLKVLLLDGDINSAAETKAKLEAMDYNNQLRAFCHGPKDASRHGLKLSTCLFIPFALFLHPIPSCFLCMLVYSITVLSKPPYFGTVSSFSDENEALSACSSRPQDFHVAVVEVSTSSSQGGFKFLENAKDLPTIMTSKTHCLSTMMKCIALNSSINHSRRTISEISGSMWFIRSVNIVTLYWQLGIYYYHNMNKIVSDVVEIKQAFNAGASVLPESLKPVRESVEPVLQLQTENGQRESKMLIDVDNVSKFSYNDHEHITGSDKYPAPSTPQLKQGERLLDGGDCQDQTNCSTEKESGEHDEDSKSVDTSCENLNTESTTQPIIPEKTPIKGEEDIADGCKGEIVVSLNPHNRNLSKAGGNSTSPNKASVRDSCEIKANRKKMKVDWTPELHKKFVHAVEQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRIQKRQIVPREEDRRWTNRRDQMQRSYCAQRPIMAYPPYHFNHTLSSPPAYPMWGQPGNQTAGVRVWGPLGYPLCQPFPTVHADAWGFPNMVGLHNAKAVDYRFDLPQNSFEHHPAEEVVDKVVKEAMNKPWLPLPLGLKPPSADSVLAELSKQGVSNITKDSSLS 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1264 615 Pfam Myb-like DNA-binding domain 401 450 IPR001005 -
Lal23g1264 615 MobiDBLite consensus disorder prediction 325 341 - -
Lal23g1264 615 MobiDBLite consensus disorder prediction 309 324 - -
Lal23g1264 615 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 44 - -
Lal23g1264 615 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 101 169 - -
Lal23g1264 615 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 218 613 - -
Lal23g1264 615 MobiDBLite consensus disorder prediction 368 386 - -
Lal23g1264 615 MobiDBLite consensus disorder prediction 273 341 - -
Lal23g1264 615 MobiDBLite consensus disorder prediction 368 387 - -
Lal23g1264 615 Gene3D - 394 456 - -
Lal23g1264 615 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 398 452 IPR006447 GO:0003677
Lal23g1264 615 PANTHER TRANSCRIPTION ACTIVATOR GLK1 218 613 IPR044825 GO:0003700|GO:0045893
Lal23g1264 615 PANTHER TRANSCRIPTION ACTIVATOR GLK1 101 169 IPR044825 GO:0003700|GO:0045893
Lal23g1264 615 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 44 IPR044825 GO:0003700|GO:0045893
Lal23g1264 615 SUPERFAMILY Homeodomain-like 397 454 IPR009057 -
Lal23g1264 615 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 395 454 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1264 Lal-Chr23 13730884 13737234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1264 102 614 Response Regulator Gene Family AT4G18020 40.323 3.76e-86 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal23g1264 Myb_DNA-binding 1.2e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0857 16 5591895 5599185 Lal23g1264 23 13730884 13737234 LSH
Lal15g0833 15 6183378 6191047 Lal23g1264 23 13730884 13737234 LSH
Lal23g1264 23 13730884 13737234 Lal15g0833 15 6183378 6191047 PCT
Lal15g0833 15 6183378 6191047 Lal23g1264 23 13730884 13737234 PCT