Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1261 ATGGCTCTCTATATTTTGTTTCTTGTACTTTCTACCACCTTGGTTTTCATGCAAACTCTAGCAGATACTTCATGCACCGATTGTTTTGTTCATTCTCGGGCAACATACTACCCAAATTCTGAAGATCAAGGAACAGACGTAGGTGCATGTGGATTTGGTTCCTTTGGTGCTACACTCAATGGAGGGGATGTATCAGCTGCATCTAATCTTTATAGGGACGGTGTTGGATGTGGCGCCTGCTACCAGGTGAGGTGTACCAACAGTGCCTATTGCTCAGACAATGGTTCAATGGTTGTTATAACAGATCAAGGCTCAAGTGATAACACTGATTTCATTCTTAGTAAACATGCCTTCGGTCGAATGGCTCAGACCGCCGATGCAACTGCTTCTCTATTAGCCCTTGGTGTGGTTGATATTCAATACAGACGAGTTGCATGCAGCTATCCAAACAAAAACATAACATTCAAGATAGATGAGAGCAGTGGCAACCCTCATTACTTGGCTTTTGTCATAAGGTATCAACAAGGAAGGAGAGACATAACTGCTGTTCAGCTCTGTGAGACTCAGAACTTTGTCTGCAAGTTACTGGATCGGAGCCATGGAGCAGTGTGGACTACTACCTCTCCACCGAGTGGACCTTTATTGATAAGGATGTTGTTTAGTGATGATGAAGAAGAAGAAACATGGGTTGTTCCTGTTAATAACATACCCCAAGATTGGAAGGCTGGAGATATATATGACTCAGGGGTACAAGTGAACCAATAG 765 0.4327 MALYILFLVLSTTLVFMQTLADTSCTDCFVHSRATYYPNSEDQGTDVGACGFGSFGATLNGGDVSAASNLYRDGVGCGACYQVRCTNSAYCSDNGSMVVITDQGSSDNTDFILSKHAFGRMAQTADATASLLALGVVDIQYRRVACSYPNKNITFKIDESSGNPHYLAFVIRYQQGRRDITAVQLCETQNFVCKLLDRSHGAVWTTTSPPSGPLLIRMLFSDDEEEETWVVPVNNIPQDWKAGDIYDSGVQVNQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1261 254 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 6 253 - -
Lal23g1261 254 PANTHER EXPANSIN-B3 6 253 - -
Lal23g1261 254 SUPERFAMILY PHL pollen allergen 151 248 IPR036749 -
Lal23g1261 254 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Lal23g1261 254 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lal23g1261 254 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lal23g1261 254 SUPERFAMILY Barwin-like endoglucanases 17 150 IPR036908 -
Lal23g1261 254 Gene3D - 17 146 IPR036908 -
Lal23g1261 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 248 IPR007117 -
Lal23g1261 254 Pfam Expansin C-terminal domain 153 231 IPR007117 -
Lal23g1261 254 Pfam Lytic transglycolase 67 141 IPR009009 -
Lal23g1261 254 Gene3D - 147 249 IPR036749 -
Lal23g1261 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 151 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1261 Lal-Chr23 13720162 13722515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1261 4 250 Expansin Gene Family AT4G17030 41.129 1.00e-60 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1261 - - gmx:100794009 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1261 23 13720162 13722515 Lal23g0765 23 10222770 10224493 PCT
Lal23g0765 23 10222770 10224493 Lal23g1261 23 13720162 13722515 PCT