Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1257 ATGGCTGTTCAAGCTCAATATCCATCCAATGTATTTCGTTTAAACAGTGGAAAAAACAGGCAACAACAAGGATATGACTATTCATCGGAACCACATACAGGACTAGATCAATCCCATATGTTGTTCAACAATGGAGGTACTAGTTCTCTGAAGAGAGGAAGAGAAGAATCAGCCCCTAACATTGTTAATCCATTATTCTCTTTGCAATCTCAATCCCACCCTTCTCAGCTTATAGACCTCACTCAACTCCTTAATCACCAACAAAATGCAGTCTCTACAGGCTTAGGTTTATCCTTCGGTGATCAACAACATCAACAACAGCATAGGTCTCCTTCTCCTTTCTTATCTCTATTCTCCGAAAGCTTAAGCTCCCAAATCAAACAACAGAGAGATGAAATTGACCAATTCCTTCGAGCCCAGGGAGAACAACTGAGTCAAGCATTAGCGGAGAAGAGACAGAGACATTATCGGGAACTCCTAAACGCAGCGGATGAATCAGTTGCACGACGGTTAAGAGAAAAAGAAGCTGAGGTAGAGAAAGCAAAGCGGAAGAACGCAGAGTTAGAGGAACACGCGGCGCAGCTTAGCATGGAAGCGCAGGTTTGGCAGGCCAAGGTGAAAGCCCAGGAATCAACCGCTGCATCGTTACAGGCCCAACTGCAACACGCTATTATGATGAGTCACGAAAAAAGGGCATTATCGTGCTTCGTGGGCCAGGCTGAGGATGCTGAATCAGCATATGTTGACCCTGACCGGGTCACGTTGTCAGGTCCCAAATGTAGAGGTTGCGGTTCACGGGTCGCGTCTGTGGTGGTTTTACCGTGTCGGCATCTTTGCGTGTGCGTGGAATGTGACAGACATTTTAGGGCGTGCCCCGTTTGCTTCACCGTTAAAAATTCGTCCATTGAAGTTTGTCTATCTTAG 924 0.461 MAVQAQYPSNVFRLNSGKNRQQQGYDYSSEPHTGLDQSHMLFNNGGTSSLKRGREESAPNIVNPLFSLQSQSHPSQLIDLTQLLNHQQNAVSTGLGLSFGDQQHQQQHRSPSPFLSLFSESLSSQIKQQRDEIDQFLRAQGEQLSQALAEKRQRHYRELLNAADESVARRLREKEAEVEKAKRKNAELEEHAAQLSMEAQVWQAKVKAQESTAASLQAQLQHAIMMSHEKRALSCFVGQAEDAESAYVDPDRVTLSGPKCRGCGSRVASVVVLPCRHLCVCVECDRHFRACPVCFTVKNSSIEVCLS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1257 307 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 306 IPR017066 -
Lal23g1257 307 ProSiteProfiles Zinc finger RING-type profile. 260 294 IPR001841 -
Lal23g1257 307 Coils Coil 164 205 - -
Lal23g1257 307 MobiDBLite consensus disorder prediction 1 53 - -
Lal23g1257 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 306 IPR013083 -
Lal23g1257 307 PIRSF SBP1_RNase_bind 1 307 IPR017066 -
Lal23g1257 307 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 306 - -
Lal23g1257 307 Coils Coil 119 139 - -
Lal23g1257 307 Pfam Zinc finger, C3HC4 type (RING finger) 259 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1257 Lal-Chr23 13690901 13692975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1257 256 294 C3H Transcription Factor Family AT3G06140 41.860 7.99e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1257 K19042 - gmx:100779548 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0863 16 5661378 5663826 Lal23g1257 23 13690901 13692975 LSH
Lal15g0840 15 6285952 6288421 Lal23g1257 23 13690901 13692975 LSH
Lal23g1257 23 13690901 13692975 Lal15g0840 15 6285952 6288421 PCT
Lal23g1257 23 13690901 13692975 Lal23g0763 23 10196134 10198465 PCT
Lal15g0840 15 6285952 6288421 Lal23g1257 23 13690901 13692975 PCT
Lal23g0763 23 10196134 10198465 Lal23g1257 23 13690901 13692975 PCT