Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1255 ATGGATTCTTTGTCAATGATCAACGAGGACCTAGCAGAGATTGATGGACAAATTACTGATATTTTTCGTGCTTTATCAAATGGATTTCAAAAGTTGGAGAAGATTAAGGATCCCAGTAGGCAGAACAGACAGTTGGAAGATCTTACAGATAAATTGAGAGATTGTAAGAGGCTTATAAAAGAGTTTGACAAAGAAGTTAAAGCTTCAGAGGGTAACCTTGATAAAGAAACCAATAAAATGCTGAACGAGAAAAAACATTCTCAGATCAAAGAGTTAAATTCATATGTTGCTTTGAAAAAACGATATGCTACAAATATTGAAAATAAACGAATTGAACTCTTTGAGGGGCCTGATCAAGGTTATGCAGAAGAAAATGTCTTGCTAGCTTCCGCAATGACTAGTGAACAATTGATGGATAGAGGGAATCACATGATGGATGAAACAGATCAAGCCATTGAGAGGGGAAAGAAGGTTGTTCAAGAAACAATAAATGTTGGAACAGAAACAGCAGCAACACTGAAGGCTCAGACTGAACAAATGAGTAGAGTTGTTAACGAGCTGGACTCAATCCATTTCTCTATGAAGAAAGCTTCTCAATTGGTCAAGGAATTGGGTAGGCAGATTGCTACTGACAAATGTTTTATGGCATTACTTTTCCTTATTGTCATTGGAGTCATAACTATCATTATTATAAAGATTGTGAACCCAAACAACACTGACATCCGTGACATTCCTGGATTAGCCCCTCCAGTTATGACCCGAAAACTGCTTTGGAATCAAACTTCTCTCAAACTCTGCTTCTGTTCTTCAGTGATTTTGATATCATTTTATGGTCAGAAAATGAAGTGCTTCTTCTTCAAACATAAATCCGAAATCAACCCAGAATCACAAAGCCCAAGCAAGAAGAAAAACCGGGCTTTGAATGGCGCAACCAAATCTATCAGTTCCCTATCACCATCAAGGAGCGTGATAGAATTGTATAAAGAGAAAGAACAAAACTTTAGAGTTTTTACTTTGCGAGAACTCATAGAGGCAACAAAGGGGTTCAATAGGATGTTGAAAATTGGAGAAGGTGGTTTTGGGAGTGTATACAGAGGAACGATTATTCCTCAAGATGGAAAAGGTGCTCCAAGTGTGGTTGCGATCAAAAAGCTCAATACATGTGGCCTCCAGGGGCATAAAGAATGGCTTGCTGAAGTTCAATTTCTGAGCATTGTTGATCACCCTAATTTGGTTAAGCTTTTGGGATACTGCTCAGTAGATAGAGGAAGAGAAATCCAACGGCTTTTGGTGTATGAGTTCATGCCCAACAGGACCCTTGAAGATCATCTTTTCAATCCTTCTTTCCCACACTTGTCTTTGAAAAGAAGATTGCAGATCATGTTTGGTGCTGCCCAAGGATTACATTACCTACATGAGGGGTTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCCAATGTGTTACTGGATGCAAATTTCCATCCCAAGCTCTCAGATTTTGGTCTAGCTAGGGAAGGTCCAAAAGGTGATGATACTCATGTATCTACTGCGGTAGTTGGGACACAGGGATATGCTGCCCCAGAGTATGTGGAAACAGGTCATCTAAAAGTTCAGTGTGACATTTGGAGTTTTGGTGTGGTACTGTATGAGATCCTCACAGGAAGAAGGGTATTAGAAAGAAAACGTCCAAAGGGGGAACAAAAGCTTCTAGAGTGGGTTAAAAACTATCCTGCTGATAGTAGCAGATTCAGCATCATAATGGACCCACGTTTAAGGAACCAATATTCTGCTGGTGTAGCTCGTAAAATAGCCAAGTTGGCAGATAGGTGCTTGAAGAAGAATCCTGAAGATAGGCCATCCATGAGTCAGATAGTGGAAAGCTTGAAGCAAGCATTGTAG 1905 0.3984 MDSLSMINEDLAEIDGQITDIFRALSNGFQKLEKIKDPSRQNRQLEDLTDKLRDCKRLIKEFDKEVKASEGNLDKETNKMLNEKKHSQIKELNSYVALKKRYATNIENKRIELFEGPDQGYAEENVLLASAMTSEQLMDRGNHMMDETDQAIERGKKVVQETINVGTETAATLKAQTEQMSRVVNELDSIHFSMKKASQLVKELGRQIATDKCFMALLFLIVIGVITIIIIKIVNPNNTDIRDIPGLAPPVMTRKLLWNQTSLKLCFCSSVILISFYGQKMKCFFFKHKSEINPESQSPSKKKNRALNGATKSISSLSPSRSVIELYKEKEQNFRVFTLRELIEATKGFNRMLKIGEGGFGSVYRGTIIPQDGKGAPSVVAIKKLNTCGLQGHKEWLAEVQFLSIVDHPNLVKLLGYCSVDRGREIQRLLVYEFMPNRTLEDHLFNPSFPHLSLKRRLQIMFGAAQGLHYLHEGLEVQVIYRDFKSSNVLLDANFHPKLSDFGLAREGPKGDDTHVSTAVVGTQGYAAPEYVETGHLKVQCDIWSFGVVLYEILTGRRVLERKRPKGEQKLLEWVKNYPADSSRFSIIMDPRLRNQYSAGVARKIAKLADRCLKKNPEDRPSMSQIVESLKQAL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1255 634 SUPERFAMILY SNARE fusion complex 132 205 - -
Lal23g1255 634 Pfam Protein tyrosine and serine/threonine kinase 354 630 IPR001245 GO:0004672|GO:0006468
Lal23g1255 634 ProSiteProfiles Protein kinase domain profile. 349 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1255 634 MobiDBLite consensus disorder prediction 292 313 - -
Lal23g1255 634 MobiDBLite consensus disorder prediction 299 313 - -
Lal23g1255 634 Gene3D Phosphorylase Kinase; domain 1 310 434 - -
Lal23g1255 634 Gene3D Transferase(Phosphotransferase) domain 1 435 634 - -
Lal23g1255 634 Gene3D - 134 212 - -
Lal23g1255 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Lal23g1255 634 SUPERFAMILY Protein kinase-like (PK-like) 331 630 IPR011009 -
Lal23g1255 634 ProSitePatterns Protein kinases ATP-binding region signature. 355 384 IPR017441 GO:0005524
Lal23g1255 634 SMART tSNARE_6 137 204 IPR000727 -
Lal23g1255 634 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Lal23g1255 634 PANTHER RECEPTOR-LIKE KINASE PLANT 298 634 - -
Lal23g1255 634 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Lal23g1255 634 Coils Coil 45 79 - -
Lal23g1255 634 PANTHER OS01G0588500 PROTEIN-RELATED 298 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1255 Lal-Chr23 13663528 13672330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1255 281 630 Glycoside Hydrolase AT3G07070 41.389 3.13e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal23g1255 PK_Tyr_Ser-Thr 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1255 - K00924 gmx:100305390 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1255 23 13663528 13672330 Lal23g1255 23 13663528 13672330 ECH
Lal16g0867 16 5689566 5692854 Lal23g1255 23 13663528 13672330 LSH
Lal15g0852 15 6391174 6405850 Lal23g1255 23 13663528 13672330 LSH
Lal23g1255 23 13663528 13672330 Lal15g0852 15 6391174 6405850 PCT
Lal23g1255 23 13663528 13672330 Lal23g0757 23 10158103 10161298 PCT
Lal15g0852 15 6391174 6405850 Lal23g1255 23 13663528 13672330 PCT
Lal23g0757 23 10158103 10161298 Lal23g1255 23 13663528 13672330 PCT