Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1254 ATGCATTGTGTTTCGACCAGAACTCGTTCTAGACGAGCACTACTTGACAATACGAAACAGAGCACCATCACCAACAACCCTGTTTCTGTTTTCGATGTTGATGATTATGGAGGAGAAGACGATACTGAATTTACTGATTCTGATTTTAGTGCAACGGAGAATGACGATGATGATGATGAGGTGCAAATTGTGAACGGTGTGAAGAATGGAGAAAAATGCGGTAATGTAGAAAAGAACGAGGGTAAAAGAGGAAGACCAAAAAGAAAGGAGGGTGAAGGTGAGGTTGGAGGATTAAGGAAGAGGAGAAAGTTGGGGCTTGATATTTTGATTGTTGAAAATAATAGTCAACACAAAATGTGTGCTGCAAAAAGGACTCGTTCACATTTTCATAGTAACAACAAGTTCAAGTTTGGGACTATTTCTAAACCAATATGCATTGACGATAATGATGATGATGATGATGATGAGAATGAGGAAGAAAAGGAAGGTGATTTTGTTGATCACACTCACGAGGATGAGCCAAGTGCTTCAAAAAACGAGGAAGAAAAAGCAAGTGGTTCTGAATCTGATGAACAATACTCTAGGAGTTCCAACAGAAAATACCATGCACGAGTTCATAATAAAGGGAAAAAGCACAAAAGGCAAGGTTTTGATGTGCTTAAGATTCTCAAGGATTCTATCTACGGGAAAGGGGAGATACTTTCAAAGGCAAGAGACAAGGAATCAAATCCTTGTTCACATTTGCCAATCAAATTTTCATCTTTACATAATGGTCCAAAAGAAGCAGAGAGATCAGAAGAAGCATTAGAACCAATTTGGACTGAAATGGAGAGTGGTTTATATGATACTCCTGATTCTTTTGTTAGTGGTCACAAGAGGGAAGCCTCTGCATTCCCAAAGAACAAACACACCTCTCCCAAATTTTCTTTATTACATAAGAATCCAAACATATCAGAAGAAGAAACTGGATTAGAACCAATTTGGGATGATATAGAGCATGGTCTTAATGATACTCCTGATTCTTGGGTTAGTAGTCACAAGGGAAAAGCCTCTGTACACCCAAAGAAGAAACATGTTCACGGTGATCCGAATAACATTGGTGTGCTTAATATTGTTCTCCAGGATTATATCTATGCTGAGGGAGGGGTGCCTATGGAAGAGCCAATCAACAATGAACTAAACCCAATCAAGGAGCTGCTGCACAAATTTCCTTTTATGTTTGCGAAACCAAAACCACCAGAGAAATCAGATGAAGAGAAAGAATTAGATCCACTTTGGGCTCAGATGGACCTTGCTCTTTATGCGACGCAAGAAAACTCTAGTTCTACTTCTCAGGTTCAAAATGATATTGATTCTGATAATGATCAATGTCCGAAGGATATAGCTACTCTTTGTCGTCAAGGGAAGCATCATCTCATTCTTAATGATGAACTAGGACTTGTATGTGAATACTGCTTACATGTTGGATTGGATATCAAGGATTATCTACCTCCCTTTAGTGAAAATCCATTTGGAAAGTCAAACAGGAGAGACTCTTACACTGAGGACCATGCACACCACTCTGTCTTTAATGATTTTCAGGATCGAGTTACTGGATATGATGATGATGATAACCGCTGTGATTATACCGGAACGGTGTGGACTATAATTCCAAGTCTGAGAAAGAATATGTATCCTCATCAGTGTGAAGCTTTTGAATTTCTTTGGAAGAATTTAGCTGGAGGGATTTTTCTTGACCAGTTGGAAAAACAAGAAGAATTTGATGGAGGCGGGTGCATTATATCTCATGCTCCTGGCACTGGGAAAACACGTCTCACTATTACATTTCTCCAGACATACATGAAGTTATATCCAAAATGCAGACCAATGATTATTGCTCCTAAAGGCATGCTTCTTACATGGGAAGAGGAATTTAGAAAATGGAATGTTGACATTCCATTTCATAATTTGAACAATCTTGACTACTCTGGCAAGGAGAGTGAGGTAGCTATGAATCTTGTGTCCGACTCTGGTTGTAATTTGTCAAGCCGTTTAGTGAAGCTATATTCCTGGAAATGTAATAGAAGTATATTGGGAATTAGCTACAAGTTGTTTGAACAACTTACTAGGCAGGACTGCAGTGATAAGGAGTTAAGGAAATTCCTTCTTGAACATCCTGGCTTATTAGTTCTTGACGAGGGACACACTCCTCGAAATTCCCGGAGTCTTATATGGAAAGCTGTCTCACAATTGCGGACAGAAAAGCGCATAATCCTCTCTGGAACTCCCTTTCAGAATAATTTCGATGAGCTTTACAACACACTCTGCTTGGCTAGGCCTAAGTTTTCTGATTGGAATCCATCTAGAGGGAAGGAGGTATTCAAGGATAAGCCAGGGTGCCCAAGAAAGGAATGTGTTGGGAAATGGAGGCATCTGACCAGATCATTTGACAAAGTTACTGATGACCGTCGAAAATTCAAGATAGCGAAAGAGGCTAGAGACATGATTCATTCCTTTGTTCATGTACACAAGGGAACAATACTACAAGAAAGTCTTCCCGGAAAGAAGGAATTTGTAGTTATATTAAAACCAACACAGTTGCAGAAAGAACTGCTTGATGATATTCAGAGAAAAAGGAAAAGACTTTCTCATGGAAACCAGGCATCCTTGAATGTGTTGAAAATAGAATATGAGGAAACTGTAACTGCTGTTCATCCTGCACTCTTTGATCTATCTGAAGGCAAGGGAAAGTTTGAAAGTCTTAGATTGAACATGGAGGAAAGTTCCAAAACAATTTTCTTAATGGAACTCATAAGACTTAGTGAGCTTGTGAATGAAAAAGTATTGGTTTTCTGCCAATTCATTAATCCCTTGAAGCTTATGGCAAGCCAGCTAAAACATCATTTTAGTTGGACAGAAGGAAGAGAAGTGTTACATCTGCATGGTCAAGTTGATGCGAAGTTGCGCCAAGCTTCAATCAAATCTTTTAACAATCCCAACAGCAAAGTGAGGGTAATGCTAGCATCAACCAAAGCTTGTTATGAAGGTATCAGTTTAGTTGGTGCATCAAGGGTTGTTTTGCTAGATGTTGTATGGAATCCCTCAGTGGAGAGGCAAGCAATTAGTCGTGCTTATCGACTTGGGCAGAAGAAATATGTGTACACTTATCATCTGATCACAGCAGGAACAAGGGAAGAAGAAAAAATCTGTCGTCAAGCTGAGAAAGAACAGCTATCAGAGTTGATGTTCTTTAATTCTTCTGATGGGGATCAGCAGCATCATGAAAAGGAATCATCTGCAGAATTGGAAGATCAAATTTTGGAAGAGATGGTTCAACAAGAAAAGTTTAAACATGTGTTGGAAAAAACTAAGAGGACGAAGAAGGCTGGTATTGTTGGCAAATATGGTACCCGTTATGGTGCTAGTCTGCGGAAGCAAATTAAGAAGATGGAAGTTAGTCAACATAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGGAAGGCTGTAGGGATATGGGGATGCAAGGATTGCGGTAAAGTGAAAGCTGGAGGTGCCTATACTTTGAATACTGCAAGTGCTGTGACTGTTCGGAGCACCATTCGTAGGTTGAGGGAACAAACCGAGGGTTGA 3621 0.3955 MHCVSTRTRSRRALLDNTKQSTITNNPVSVFDVDDYGGEDDTEFTDSDFSATENDDDDDEVQIVNGVKNGEKCGNVEKNEGKRGRPKRKEGEGEVGGLRKRRKLGLDILIVENNSQHKMCAAKRTRSHFHSNNKFKFGTISKPICIDDNDDDDDDENEEEKEGDFVDHTHEDEPSASKNEEEKASGSESDEQYSRSSNRKYHARVHNKGKKHKRQGFDVLKILKDSIYGKGEILSKARDKESNPCSHLPIKFSSLHNGPKEAERSEEALEPIWTEMESGLYDTPDSFVSGHKREASAFPKNKHTSPKFSLLHKNPNISEEETGLEPIWDDIEHGLNDTPDSWVSSHKGKASVHPKKKHVHGDPNNIGVLNIVLQDYIYAEGGVPMEEPINNELNPIKELLHKFPFMFAKPKPPEKSDEEKELDPLWAQMDLALYATQENSSSTSQVQNDIDSDNDQCPKDIATLCRQGKHHLILNDELGLVCEYCLHVGLDIKDYLPPFSENPFGKSNRRDSYTEDHAHHSVFNDFQDRVTGYDDDDNRCDYTGTVWTIIPSLRKNMYPHQCEAFEFLWKNLAGGIFLDQLEKQEEFDGGGCIISHAPGTGKTRLTITFLQTYMKLYPKCRPMIIAPKGMLLTWEEEFRKWNVDIPFHNLNNLDYSGKESEVAMNLVSDSGCNLSSRLVKLYSWKCNRSILGISYKLFEQLTRQDCSDKELRKFLLEHPGLLVLDEGHTPRNSRSLIWKAVSQLRTEKRIILSGTPFQNNFDELYNTLCLARPKFSDWNPSRGKEVFKDKPGCPRKECVGKWRHLTRSFDKVTDDRRKFKIAKEARDMIHSFVHVHKGTILQESLPGKKEFVVILKPTQLQKELLDDIQRKRKRLSHGNQASLNVLKIEYEETVTAVHPALFDLSEGKGKFESLRLNMEESSKTIFLMELIRLSELVNEKVLVFCQFINPLKLMASQLKHHFSWTEGREVLHLHGQVDAKLRQASIKSFNNPNSKVRVMLASTKACYEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKYVYTYHLITAGTREEEKICRQAEKEQLSELMFFNSSDGDQQHHEKESSAELEDQILEEMVQQEKFKHVLEKTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTEG 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1254 1206 Gene3D - 846 1119 IPR027417 -
Lal23g1254 1206 Pfam SNF2-related domain 578 888 IPR000330 GO:0005524|GO:0140658
Lal23g1254 1206 CDD SF2_C_SNF 921 1052 - -
Lal23g1254 1206 SMART helicmild6 952 1041 IPR001650 -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 199 213 - -
Lal23g1254 1206 Hamap 50S ribosomal protein L37Ae [rpl37ae]. 1118 1186 IPR002674 GO:0003735|GO:0005840|GO:0006412
Lal23g1254 1206 SMART ultradead3 553 787 IPR014001 -
Lal23g1254 1206 Gene3D - 1120 1206 IPR011331 GO:0003735|GO:0005840|GO:0006412
Lal23g1254 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 838 1099 IPR027417 -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 69 97 - -
Lal23g1254 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 776 IPR027417 -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 238 265 - -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 73 97 - -
Lal23g1254 1206 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 583 774 IPR014001 -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 163 198 - -
Lal23g1254 1206 Pfam Helicase conserved C-terminal domain 927 1041 IPR001650 -
Lal23g1254 1206 Gene3D - 534 790 IPR038718 -
Lal23g1254 1206 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 348 1118 IPR044567 GO:0080188
Lal23g1254 1206 MobiDBLite consensus disorder prediction 341 361 - -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 34 57 - -
Lal23g1254 1206 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 348 1118 - -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 146 213 - -
Lal23g1254 1206 TIGRFAM eL43_euk_arch: ribosomal protein eL43 1117 1205 IPR002674 GO:0003735|GO:0005840|GO:0006412
Lal23g1254 1206 Pfam Ribosomal L37ae protein family 1118 1202 IPR002674 GO:0003735|GO:0005840|GO:0006412
Lal23g1254 1206 CDD DEXHc_ATRX-like 557 775 - -
Lal23g1254 1206 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 929 1091 IPR001650 -
Lal23g1254 1206 MobiDBLite consensus disorder prediction 147 162 - -
Lal23g1254 1206 SUPERFAMILY Zn-binding ribosomal proteins 1124 1196 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1254 Lal-Chr23 13655177 13662455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1254 1117 1206 Cytoplasmic Ribosomal Protein Gene Family AT3G60245 93.333 7.80e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal23g1254 SNF2_N 1.3e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1254 K10875 - jre:109003751 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1254 23 13655177 13662455 Lal23g1254 23 13655177 13662455 ECH