Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1243 ATGGCAGCATCAGTCAATATTGGTCATTCTGAAGAAATATTTGGGAAGCGATCGATTGAAAATGGGGGTTGCACTTCTCTTATTAGGTCCATGTATAAGCGGCGTAAAATTTCTGCAATTCGTGATTTTCCAGTGGGATGTGGACCATTGGATTCAAATGTTGGTCCAGTGTCAAAGGTAGATGTCACTGGTTTTGTTTCAGCTAATGGTACAAATATTGAGCATTCAGGGGATGATACTGTTAGAAATTCCAAGTGTGAAGATGATTATCAGCATTCCGTGTTAAAAAAAGATTCAATTCTTAACGAGTCCCTTCGCCAAACAACTGACTGTAGTTTGACGAATAAAAATCCAGTGGTTGCTTCTCATCATGCCGATGGGCTTCCATTGGCAAATGATGAGTCGAAAAATGTGGAATCGGTGGGCGCAGAAGCTATGGAGGATACAAGGTTGACCCTTGGCCAAACAACTGACTGTAATCTGAAGAATCGCGAAACAGCTGACTTTTGTTTGAAGAATGAAGATCCAGTAGTTGCTTCTCATCATGTGGATGGTCTTCCTTTGGCAAATGACGATCCTGCAAAAGTTCTGTTGGTTAGTGTGGAAGCTATGGAGGATACAGGGTTGATTGGAATTGCGAACTCTGTAAAATGTGTATCCTTTATGCCAAAGTCACCTTCTCCAGTGGGTGGGGTGGCTTTGTCAGGTGGTTTGAAGTCCTGTTGCAATGGCAATGTATCTGGTTCCAGTGATTGCATTGAGAAGGCTATGACTACAAGGTATGCTCCTCGAAGAAAACTTTCAGCTGTCAGAGATTTTCCCCCTTTATGTGGGCGCAATGCTCTACGTCTCAGCAAGGACGAGCATCTAAATGAGATCTCTTTGGATAACAAGATACCGGATCAACAGAACTTGACTGTAGATGACAATCCATTGAAAAAAATAACAGCCACTGATGTGCAGGAGAAGGACAATAACAGTCAAAAGGAAAATGCGTGCAAGAGAAAGCTTGTGGATGTAGGTAAAGCTGATCCTGAAAGAAGTGCCACAAAGAAAGTGAAGAAGATAGATGCATTTGAACATCCTCATGGAAGTAATCATCAAGTTGTAAGAAATTTCAAGACAGCTGTTGAAGAGGAAAATCAGGATGTTGCACAGGTCGAGAGAGCGTCAGGGCTAGCGATAATAGCTTGCCCAGAAGTCCAAAGTCCTGAGGCAAAGCCTTTAGATATGTGTACTTGTCAGCATGAGTTGAAAGGAGATTTTAGTGGATTGCAGGTTTCATCAGATAGGAAAGTGGTGCTAGGTTTGATGTCTAAATCAGAATGTCCTTGGAGATCTGATAAAGATTTTTCCATATCTAAAATGTTTGGTGATAAAGATTCTTCGATATCTAAAATGTTTGGCGATAATGATTCTTCCATATCTAAAGCTACTTTGAAGTGTAAAGATGTACCAAATCAGTCTGGGCAGAAGCCATTGAAAAAGAAAAAAGAAAATGCTGCTTCTGATGGGATGGATCAATTAGTAGTGTTTCAAAAGGATTCTCTTGACCCCAAGGAAAACATCGAAGACTTTCAGGTTGTCCCTAAATCACATGGTTTCAATGTAAATGTTCCTCCTTTTGGTCATGGTAATTTTGGTGGTCATGAGAATGACTCAACTGTGACCCGAAATAAAGTCAGGGAAACATTACGCCTGTTTCAAGTTGTTTCTAGAAAGATTTTGCAGCAAGTAGAAGGTAATTCGAAAGGGCGAGCAAATAATTCCAAGAGGGTTGATTTACAAGCTTCCAAGATCCTTAAGGAGAAAGGGAAATATGTTAACACAGGCAAGCAAATATTGGGATCTGTCCCTGGGGTTGAAGTTGGTGATGAATTTCAGTATAGGGTGGAGCTTCTTATGATTGGCCTTCATCGCCAGAGTCAGGGTGGTATAGATTATGTGAAGCACAATGGTAAGATCCTTGCAACTAGTATTGTTGCATCAGGGGGCTATGCTGATGATCTGGATAATTCGGATGTCTTGATATATACAGGGCAGGGTGGAAATGTGATGAGCTCCGATAAAGAACCTGAAGATCAGAAGCTTGAGCGGGGCAATCTTGCTTTGAAGAACAGTAGTGACGAAAAGAATCCTGTTAGGGTGATACGTGGCTATGAATCGATGGACAGAAAGGCCAAGACATTGGTTTATGATGGACTATATCTGGTTGAGTCGTATTGGCAGGATATGGGGCCACATGGGAAGCTGGTTTATAAGTTTCGTCTGCGAAGAATCCCAGGTCAACCTGAGCTTGCTTTGAAGGAAGTGAAGAAATCTAAAAAGTTCAAAAGAAGGGAAGGTCTATGTGTTGATGATATTTCTCATGGGAAAGAGCGGATTCCAGTATGTGCTGTGAACACTGTAGATGATGAGAAACCCCCGTCATTTAAGTACATAACTAGCATGATATATCCCGATGGCAATCTCACTCGTCATGAAGGATGTGATTGTACTAATGGATGCTCTGACTTGAATAAATGTTCTTGTGTAGTAGAAAATGGGGGAGAGATCCCATTCAATCACAATGGCGCTATTGTAGAAGCAAAGCCTCTAGTCTATGAGTGTGGACCATCTTGCAAGTGCCCTTCAACATGCCATAATAGAGTCAGCCAACTCGGCATAAAGTTTCAACTTGAAATATTTAAAACCAGTACAAGGGGATGGGGTGTGAGATCTCTAAATTCCATACCTTCAGGAAGTTTTATCTGCGAGTACATAGGAGAACTTCTCGAAGACAAGGAAGCTGAACAAAGAACTAGTAATGATGAGTATCTTTTTGATATTGGAAATAACTTCACCAACAGTACTCTCTGGGATGGACTTTCCACACTTATGCCTGATGCACAGTCAAGTTTTCTTGAAGTTGTGAAGGATGGCGGCTTCACAATTGATGCTGCCGAGTATGGTAATGTGGGGAGATTCATCAACCATAGTTGCTCCCCTAATCTTTATGCCCAGAATGTCCTTTATGATCATGTTGACAACAGTATGCCTCACATAATGTTATTTGCTGCTGAGAACATTCCTCCACTGCAAGAGCTGACTTACGATTACAATTACAAGATTGACCAAGTCTTTGATTCTGATGGCAATATAAAAAGGAAAGATTGCTATTGTGGCTCTGTTGAATGTACTGGTAGGATGTATTGA 3195 0.4122 MAASVNIGHSEEIFGKRSIENGGCTSLIRSMYKRRKISAIRDFPVGCGPLDSNVGPVSKVDVTGFVSANGTNIEHSGDDTVRNSKCEDDYQHSVLKKDSILNESLRQTTDCSLTNKNPVVASHHADGLPLANDESKNVESVGAEAMEDTRLTLGQTTDCNLKNRETADFCLKNEDPVVASHHVDGLPLANDDPAKVLLVSVEAMEDTGLIGIANSVKCVSFMPKSPSPVGGVALSGGLKSCCNGNVSGSSDCIEKAMTTRYAPRRKLSAVRDFPPLCGRNALRLSKDEHLNEISLDNKIPDQQNLTVDDNPLKKITATDVQEKDNNSQKENACKRKLVDVGKADPERSATKKVKKIDAFEHPHGSNHQVVRNFKTAVEEENQDVAQVERASGLAIIACPEVQSPEAKPLDMCTCQHELKGDFSGLQVSSDRKVVLGLMSKSECPWRSDKDFSISKMFGDKDSSISKMFGDNDSSISKATLKCKDVPNQSGQKPLKKKKENAASDGMDQLVVFQKDSLDPKENIEDFQVVPKSHGFNVNVPPFGHGNFGGHENDSTVTRNKVRETLRLFQVVSRKILQQVEGNSKGRANNSKRVDLQASKILKEKGKYVNTGKQILGSVPGVEVGDEFQYRVELLMIGLHRQSQGGIDYVKHNGKILATSIVASGGYADDLDNSDVLIYTGQGGNVMSSDKEPEDQKLERGNLALKNSSDEKNPVRVIRGYESMDRKAKTLVYDGLYLVESYWQDMGPHGKLVYKFRLRRIPGQPELALKEVKKSKKFKRREGLCVDDISHGKERIPVCAVNTVDDEKPPSFKYITSMIYPDGNLTRHEGCDCTNGCSDLNKCSCVVENGGEIPFNHNGAIVEAKPLVYECGPSCKCPSTCHNRVSQLGIKFQLEIFKTSTRGWGVRSLNSIPSGSFICEYIGELLEDKEAEQRTSNDEYLFDIGNNFTNSTLWDGLSTLMPDAQSSFLEVVKDGGFTIDAAEYGNVGRFINHSCSPNLYAQNVLYDHVDNSMPHIMLFAAENIPPLQELTYDYNYKIDQVFDSDGNIKRKDCYCGSVECTGRMY 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1243 1064 Pfam Pre-SET motif 788 883 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal23g1243 1064 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 497 1063 - -
Lal23g1243 1064 SMART preset_2 785 875 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal23g1243 1064 SUPERFAMILY SET domain 775 1041 IPR046341 -
Lal23g1243 1064 Pfam SAD/SRA domain 615 763 IPR003105 -
Lal23g1243 1064 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 447 1064 IPR025794 GO:0016571
Lal23g1243 1064 ProSiteProfiles SET domain profile. 891 1034 IPR001214 GO:0005515
Lal23g1243 1064 SMART PostSET_3 1048 1064 IPR003616 -
Lal23g1243 1064 SMART G9a_1 611 763 IPR003105 -
Lal23g1243 1064 Coils Coil 370 390 - -
Lal23g1243 1064 SUPERFAMILY PUA domain-like 597 773 IPR015947 -
Lal23g1243 1064 Gene3D SET domain 780 1064 IPR046341 -
Lal23g1243 1064 ProSiteProfiles Post-SET domain profile. 1048 1064 IPR003616 -
Lal23g1243 1064 ProSiteProfiles Pre-SET domain profile. 828 888 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lal23g1243 1064 Pfam SET domain 902 1034 IPR001214 GO:0005515
Lal23g1243 1064 SMART set_7 891 1040 IPR001214 GO:0005515
Lal23g1243 1064 Gene3D - 598 779 IPR036987 -
Lal23g1243 1064 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 497 1063 - -
Lal23g1243 1064 ProSiteProfiles YDG domain profile. 616 759 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1243 Lal-Chr23 13600921 13604115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1243 558 1061 Su(var)3-9 homologs AT5G04940 41.618 2.56e-117 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lal23g1243 SAD_SRA 5.3e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1243 K11420 - gmx:100803378 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0304 16 1832372 1834291 Lal23g1243 23 13600921 13604115 LSH
Lal15g0238 15 1628834 1636581 Lal23g1243 23 13600921 13604115 LSH