Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1241 ATGGACGCATTCACCACATATTTCGATTCAAGGAACCGATGGAACTACGATACGCTCAAGAACTTCCGTCAGATTTCACCCGTCGTTCAGAATCATCTCAAGCAGGTTTATTTTAGCTTGTGTTGTGCCGTTATTGCTGCCGCCGTTGGAGCTTACCTTCATGTCCTTTGGAATATTGGTGGTTTTCTTACTACATTAGGATGTGTGGGAAGCATGATTTGGTTGCTCTCAACATCTCCTCATGAAGAGCAAAAGAGGGTGAGTTTGTTGATGCTCTCTTCACTGTTTGAGGGTGCCTCCATTGGACCATTGATTGATATGGCTATTCAAATTGATCCAAGGGACTTGGCAATTGAGAATTTGAGATCAAATCCCAATTTCACCAAGGGGAGGGAAGGCCTCATCTTTAGCGCATTTGTGGCAACTTCCTTGGTCTTTGCGTGTTTCTCTGGAGCAGCTTTGGTTGCAAAGAGAAGGGAATACCTCTATCTTGGTGGGTTAGTGTCTTCTGGGTTGTCCGTTCTTTTCTGGTTGCACTTTGCTTCTTCCATCTTTGGAGGTTCAATAGCTCTGTTTAAGTTTGAGTTGTATTTTGGGCTTTTGGTGTTTGCCGGATACATAATTGTAGACACCCAAGAAATTGTTGAGAAGGCACACTTTGGTGATCTGGATTATGTGAAGCATGCCTTGACCTTGTTTACTGATTTGGCTGCAATCTTTGTTCGGGTTCTCATTATCATGGTGGAGAAGTTAGGAAACAGTCGCCTTGTTGGTCCCAAAAAGATTCTCCATAATCACTTTATGGGTACACCACTTTGGCGCAATGGGCCACCCGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACTAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGAAGAAGGTGATGCTTATGAGGATCAAAGGTTTTCCAGGGTAAAGAGCATGCCATCAAATAAGAATAAAGAAGTGAAATCGCTCAAACGAAAGCTGAACAATGATAATGTTTTATATGGAGGGTTTTCTCCCGATTACAACCAGGGATTCCGGAAGGCTTTAGATGAAGATACAAGCAACCGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGCATGGATGCTAATGATTTGACAGGTCCTGCTCAGCCAGTGGTGTGGGATACTATGGTGCCTTCAAAAAAGAGGACATGTGTGAGTCGTCCAAAGCCTTCTTCTGTTGAGAAGCTCACGAAAGATTTATGCACTATTCTTCACGAACAGCAGTCTTATTTTTCTGCATCTTCCGAAGAGGATCTTCTTTTTGAAAGCCAAACACCAATGGTCTCTGTTGAGATAGGACATGGGAGCATTCTCATCAGGCATCCTAGCTACATAGCTCATGATGAAGAGTCTGAGGCTAGCTCTCTTTCACTTGATAATAAACAATGCACAATGAATGATGCATATTCATATCCTGGTGCCACTCTTATGCTTAACGATTTCAGTGGTATGAACTTCTCATCCATGGAAGTTGAAAAGGTTAGGAACACTGCTGGCCAGGGAATGCAGCAAGAGCAATTTAAAAGGCATGCTTTCTTACTCTTGGAGCAGTCCCACCTTGAAAGAGTGCAAATCCTTGGAAATCATGATTCACCACTGCGCTTAATAGACTTAAATGATATAGTAAACTATGAGGAGTTCTTGAAAAACTTGACAAATGAAGAGCAGCATCAACTACTGAAGCTTCTTCCTGTGGTCGATGCTGTTAAACTTCCTGATAGCCTCAAACTCATGTTCAATAGCTCTCAATTCAGGGAGAACTTAACTTATTTTCAGCAGCTTCTTGTAGAAGGTGTCTTTGATATCTCTTTGTCAGAGACAAAACCTGAAGACGGCAAAACTTTGAAAAGTCTAGCATTGTCCAATCTGCCAAAATCAAAATGGGCAGAACACTACAATTTTCACAAGAGATGTAAAACCAAAACTGTAAAATCTGTTACTCTGGAGTCAAATGGTACAGTATCAAGTAATGTTGCAAACAACAAGAGATTGTGTGACAACCGATATCAAAACTTTCCAGAATTGAGGACAATAATGAGAAGTCCCAAAAGGGTGGTAGCAAAGGCTGGCTGTGAGGGCAATGAATTTGTAGAAGATGGTTCTTACTGCAGTCCCAAAAGCCTATTTACTTTGCCTCCTGATGCTAGCTCGCCATTTCTCGATTCATTAAACTTTGTCGAGGAGAGTTCTGATCAGGATATACTACTAGAGGTGCCATCTAATAGTTATTTTCCTCAGGCAGAGCTCCTGCTGAGATTAGGGTCTGCATACATAATTTGCATGTTAAACATATCATGGTTGTACCTTTGTTCCTTGCGACCACGACCTTGGATCGTCGATGATGGCTATTTCTGTATAGACTTGGCAACTGGGGAGTATGACAAGGTCATACAGGGTCAATTCGATCTAGAAGGGTTCAACCCTTCAACAAGTCACTTCCAATAA 2526 0.4224 MDAFTTYFDSRNRWNYDTLKNFRQISPVVQNHLKQVYFSLCCAVIAAAVGAYLHVLWNIGGFLTTLGCVGSMIWLLSTSPHEEQKRVSLLMLSSLFEGASIGPLIDMAIQIDPRDLAIENLRSNPNFTKGREGLIFSAFVATSLVFACFSGAALVAKRREYLYLGGLVSSGLSVLFWLHFASSIFGGSIALFKFELYFGLLVFAGYIIVDTQEIVEKAHFGDLDYVKHALTLFTDLAAIFVRVLIIMVEKLGNSRLVGPKKILHNHFMGTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHAREEGDAYEDQRFSRVKSMPSNKNKEVKSLKRKLNNDNVLYGGFSPDYNQGFRKALDEDTSNRSSSGSAISNSESCAQFGGMDANDLTGPAQPVVWDTMVPSKKRTCVSRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESQTPMVSVEIGHGSILIRHPSYIAHDEESEASSLSLDNKQCTMNDAYSYPGATLMLNDFSGMNFSSMEVEKVRNTAGQGMQQEQFKRHAFLLLEQSHLERVQILGNHDSPLRLIDLNDIVNYEEFLKNLTNEEQHQLLKLLPVVDAVKLPDSLKLMFNSSQFRENLTYFQQLLVEGVFDISLSETKPEDGKTLKSLALSNLPKSKWAEHYNFHKRCKTKTVKSVTLESNGTVSSNVANNKRLCDNRYQNFPELRTIMRSPKRVVAKAGCEGNEFVEDGSYCSPKSLFTLPPDASSPFLDSLNFVEESSDQDILLEVPSNSYFPQAELLLRLGSAYIICMLNISWLYLCSLRPRPWIVDDGYFCIDLATGEYDKVIQGQFDLEGFNPSTSHFQ 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1241 841 Pfam Inhibitor of apoptosis-promoting Bax1 30 247 IPR006214 -
Lal23g1241 841 Pfam Asx homology domain 551 629 IPR028020 -
Lal23g1241 841 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 556 667 IPR044867 -
Lal23g1241 841 CDD ZnF_GATA 270 309 IPR000679 GO:0006355|GO:0043565
Lal23g1241 841 Gene3D - 266 342 IPR013088 GO:0006355|GO:0008270
Lal23g1241 841 SMART GATA_3 266 310 IPR000679 GO:0006355|GO:0043565
Lal23g1241 841 Pfam GATA zinc finger 270 296 IPR000679 GO:0006355|GO:0043565
Lal23g1241 841 PANTHER OSJNBB0038F03.10 PROTEIN 262 779 IPR044589 -
Lal23g1241 841 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 262 779 - -
Lal23g1241 841 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 267 300 - -
Lal23g1241 841 CDD BI-1 22 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1241 Lal-Chr23 13587183 13597508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1241 264 780 C2C2-Gata Transcription Factor Family AT4G17570 49.527 1.87e-135 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal23g1241 Bax1-I 4.5e-32 CL0453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1241 - - gmx:100798504 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0878 16 5759532 5765333 Lal23g1241 23 13587183 13597508 LSH
Lal15g0863 15 6468521 6473876 Lal23g1241 23 13587183 13597508 LSH
Lal23g1241 23 13587183 13597508 Lal15g0863 15 6468521 6473876 PCT
Lal23g1241 23 13587183 13597508 Lal23g0746 23 10056525 10061681 PCT
Lal15g0863 15 6468521 6473876 Lal23g1241 23 13587183 13597508 PCT
Lal23g0746 23 10056525 10061681 Lal23g1241 23 13587183 13597508 PCT