Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1235 ATGGATGGACAGAGTAGCTATGAGTCTGATTTGGCACTTTTAGACTCAATTCGCCGCCACTTGCTTGACGAATCTGACCCATTCAGATTCGGAGCCCCGTCTTGTAATTCGGGTCAAACTTCGTTTTATTCTCGGAGCTCCAGTTTCAGCAGCTTGTACCCATGTTTGAGTGACAATTGGGGTGAATTGCCACTCAAAGAAGACGATTCAGAAGACATGGTACTCTACGGTGTTCTTCGCGACGCCGTTAATGTTGGGTGGATCCCATCATCCGAAGCCGGGTCACCCGATAGCTCCGCATTGAGTTTCCAGGTAAAATCGGAGCTTGATCATTTTCCTGCGGTGTTCAGTCCGCCTGAGACAATTTCTAGAGTTCCTAATATTCCCCAAGTGAAGGATTTTCCAGCGGTAGTTCCAGAAAAGGGGAAGCATTACCGCGGCGTGAGGCAACGACCGTGGGGAAAGTTCGCGGCCGAGATCCGCGACCCGGCGAAAAATGGGGCGCGGGTTTGGCTCGGAACATACGAAACCGCTGAGGATGCAGCTTTGGCTTACGATAGAGCTGCGTATCGAATGCGTGGTTCGAGGGCTATGCTGAATTTCCCGCTTCGGGTTAATTCGGGTGAACCAGACCCAATACGAGTGACATCTAAGCGTGCATCGCCAGAGCCATCGTCATCGTCAGAAAAATTATCGGCAGCGAAAAGGAAGAAGAAAACGGTAGGGCCAACTGTGCAAGTGGTGACAGGTCAAGCGGGACAGCACACACGTGGAGAGCAATTATTGGAAGTAGTGGCTTCTCTACTACTCACTGACCCAACAAACTTTGGATTGTTGCGTTTTGAAAAGCGAAATAAGGGTTTCAAACAAAGCTGGCATAATGGGATGAAGGGCTAG 897 0.5006 MDGQSSYESDLALLDSIRRHLLDESDPFRFGAPSCNSGQTSFYSRSSSFSSLYPCLSDNWGELPLKEDDSEDMVLYGVLRDAVNVGWIPSSEAGSPDSSALSFQVKSELDHFPAVFSPPETISRVPNIPQVKDFPAVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPIRVTSKRASPEPSSSSEKLSAAKRKKKTVGPTVQVVTGQAGQHTRGEQLLEVVASLLLTDPTNFGLLRFEKRNKGFKQSWHNGMKG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1235 298 Gene3D AP2/ERF domain 143 205 IPR036955 GO:0003700|GO:0006355
Lal23g1235 298 PRINTS Ethylene responsive element binding protein signature 145 156 IPR001471 GO:0003700|GO:0006355
Lal23g1235 298 PRINTS Ethylene responsive element binding protein signature 168 184 IPR001471 GO:0003700|GO:0006355
Lal23g1235 298 SUPERFAMILY DNA-binding domain 144 204 IPR016177 GO:0003677
Lal23g1235 298 MobiDBLite consensus disorder prediction 208 244 - -
Lal23g1235 298 ProSiteProfiles AP2/ERF domain profile. 144 202 IPR001471 GO:0003700|GO:0006355
Lal23g1235 298 PANTHER DNA-BINDING DOMAIN 28 242 IPR044808 GO:0003700|GO:0009873
Lal23g1235 298 CDD AP2 143 202 IPR001471 GO:0003700|GO:0006355
Lal23g1235 298 Pfam AP2 domain 144 194 IPR001471 GO:0003700|GO:0006355
Lal23g1235 298 SMART rav1_2 144 208 IPR001471 GO:0003700|GO:0006355
Lal23g1235 298 PANTHER BNAANNG21280D PROTEIN 28 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1235 Lal-Chr23 13545382 13546363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1235 1 262 AP2-EREBP Transcription Factor Family AT4G17500 51.408 1.64e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal23g1235 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1235 K09286 - gmx:100819649 301.982