Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1233 ATGATGACAACAGTTGAGAAGGAAGATCTGGGTTTGAGCCTAAGCTTGAGCTTCACTCACAATACCCCAAATCCTATGCATATAAATCTCATGTCTACTCCGTTTTGCAATCCTCAGAAACCTTATTGGATTAATAATCCATTCACATCTTCAGATCGAGATTCAGAGACATGCAAAGGAGAACGTGAAACATTCCTACAAGGAATCGATGTGAATCGTTTACCTTCAGTAGTTGATTGTGAAGATGAAGCTGGTATTTCATCTCCAAACAGCACCATCTCAAGCGTGAGTGGTAAACGCAGCGAAAGAGAACCCAACGGTGAAGAAGAAGACGAAGAAGACGCCGAAACTGCCCGAAAAAAACTCAGACTCTCTAAAGATCAATCAGCTATTCTCGAAGAGAGCTTCAAAGAACACAACACTCTTAATCCCAAGCAAAAGCTGGCTCTAGCAAAAAAGTTGGGCCTTCGAGCAAGACAAGTAGAAGTGTGGTTCCAGAACAGAAGGGCGAGGACAAAGTTGAAGCAAACTGAGGTGGATTGTGAGTTTTTGAAACGGTGTTGTGAGAATTTGACGGAGGAAAATCGGAGGCTGCAAAAAGAAGTTCAGGAATTGAGAGTACTCAAACTTTCTCCTCATTTCTACAATCACATGACCCCACCCACTACCCTCACTATGTGCCCATCGTGTGAGCGTGTCGCTGTTCCTCCATCTGCCGTTGATTTTGCCACGCGTCATCATCCTATGTCTTCAACTCGTGCCCGGCCCATTTCTGTTGTTGGCCCATGGGCTTCTGGTGCAGCTCCTATCCCCTTCGATGTTCTTCGCCCCAGATCGTGA 840 0.4536 MMTTVEKEDLGLSLSLSFTHNTPNPMHINLMSTPFCNPQKPYWINNPFTSSDRDSETCKGERETFLQGIDVNRLPSVVDCEDEAGISSPNSTISSVSGKRSEREPNGEEEDEEDAETARKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKKLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRVLKLSPHFYNHMTPPTTLTMCPSCERVAVPPSAVDFATRHHPMSSTRARPISVVGPWASGAAPIPFDVLRPRS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1233 279 Gene3D - 123 173 - -
Lal23g1233 279 PANTHER - 4 271 - -
Lal23g1233 279 ProSiteProfiles 'Homeobox' domain profile. 115 175 IPR001356 GO:0003677
Lal23g1233 279 MobiDBLite consensus disorder prediction 85 100 - -
Lal23g1233 279 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 4 271 - -
Lal23g1233 279 CDD bZIP 168 206 - -
Lal23g1233 279 Pfam Homeobox associated leucine zipper 175 206 IPR003106 GO:0006355|GO:0043565
Lal23g1233 279 Coils Coil 174 208 - -
Lal23g1233 279 PRINTS Lambda-repressor HTH signature 146 155 IPR000047 GO:0003677
Lal23g1233 279 PRINTS Lambda-repressor HTH signature 155 171 IPR000047 GO:0003677
Lal23g1233 279 Pfam HD-ZIP protein N terminus 5 104 IPR006712 GO:0005634
Lal23g1233 279 SMART HOX_1 117 179 IPR001356 GO:0003677
Lal23g1233 279 MobiDBLite consensus disorder prediction 82 121 - -
Lal23g1233 279 Pfam Homeodomain 119 173 IPR001356 GO:0003677
Lal23g1233 279 SMART halz 175 218 IPR003106 GO:0006355|GO:0043565
Lal23g1233 279 ProSitePatterns 'Homeobox' domain signature. 150 173 IPR017970 GO:0000981|GO:0006355
Lal23g1233 279 CDD homeodomain 119 176 IPR001356 GO:0003677
Lal23g1233 279 SUPERFAMILY Homeodomain-like 113 176 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1233 Lal-Chr23 13540530 13542666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1233 7 279 Homeobox Transcription Factor Family AT4G17460 56.566 3.37e-103 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal23g1233 HD-ZIP_N 1.2e-30 No_clan