Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lal23g1226 | ATGGAGAGGCACAAATGCAAACTTTGTTCAAGAACATTCGTTAATGGCAGAGCATTGGGTGGTCACATGAAGGGTCATTTCACCACCCTCCCTCTTCCTCCAAAGCCAGAATCTGTAACTACCCACAATGACTATGCTTCTTTCTCTTATGCTTTATCTTCTGAAAAAGAAAATGAAGAGAAGTATATGGTTTATGGTTTAAGAGAGAAACCAAAGAAAAGTTTCAGATTTGTAGATCCTAAGTTCTCTTTTCCATCTGATATTGTGGTTCAAGATAGAGAGAGTGAGACCGAGTCAAAGAACCCAACTCGTAAAAGATCCAAAAGAAACAGAAAGTACTTGGAACCAAACAACAAAGGTAAACTGAGTTTGGTGGAGTTGTCACCAGTGAGTTCAGTTTCTGAGACATGGCCTGAAGAAGATGTTGCTATGTGTCTCATTATGCTTTCAAGGGACACGTGGAAAAAGAAGAATGTCATGGAAGAAGAACAAGTTGAGGAACAAAAACCAAAACCAAATGGGTTGGGTTTGGAAAAGAGAAATATGAAGTTGAAGAGAATCAATGGGAAACACAATAAGTGTGACAAGTGTGCCAAAACTTTTCGATCTTCTCGTGCATTGGGGAGTCACAGAAGTATATGTTATAGTAGTGATGATGATAAAAGTAAAATCTTTGAATGCCCATTTTGTTATAAGGTTTTTGGGTCAGGTCAAGCACTTGGTGGTCACAAGAGATCTCATCTTATTCCATCTTCATCTTCAAATGCTAATAACCATTCAACTACTAGTCCTACATTCAAAGACACCTTCATAGATCTTAACTTGCCACCACAACCTGAAGAAGATGACCTTAGTGTTGTTTCTGATGCCTGA | 873 | 0.386 | MERHKCKLCSRTFVNGRALGGHMKGHFTTLPLPPKPESVTTHNDYASFSYALSSEKENEEKYMVYGLREKPKKSFRFVDPKFSFPSDIVVQDRESETESKNPTRKRSKRNRKYLEPNNKGKLSLVELSPVSSVSETWPEEDVAMCLIMLSRDTWKKKNVMEEEQVEEQKPKPNGLGLEKRNMKLKRINGKHNKCDKCAKTFRSSRALGSHRSICYSSDDDKSKIFECPFCYKVFGSGQALGGHKRSHLIPSSSSNANNHSTTSPTFKDTFIDLNLPPQPEEDDLSVVSDA | 290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lal23g1226 | 290 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
| Lal23g1226 | 290 | SMART | c2h2final6 | 225 | 247 | IPR013087 | - | |
| Lal23g1226 | 290 | SMART | c2h2final6 | 192 | 212 | IPR013087 | - | |
| Lal23g1226 | 290 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
| Lal23g1226 | 290 | SUPERFAMILY | beta-beta-alpha zinc fingers | 222 | 248 | IPR036236 | - | |
| Lal23g1226 | 290 | MobiDBLite | consensus disorder prediction | 247 | 269 | - | - | |
| Lal23g1226 | 290 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 192 | 220 | IPR013087 | - | |
| Lal23g1226 | 290 | Gene3D | Classic Zinc Finger | 188 | 263 | - | - | |
| Lal23g1226 | 290 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 227 | 247 | IPR013087 | - | |
| Lal23g1226 | 290 | MobiDBLite | consensus disorder prediction | 91 | 117 | - | - | |
| Lal23g1226 | 290 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
| Lal23g1226 | 290 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 290 | IPR044303 | GO:0006355 | |
| Lal23g1226 | 290 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 290 | - | - | |
| Lal23g1226 | 290 | Pfam | C2H2-type zinc finger | 3 | 26 | - | - | |
| Lal23g1226 | 290 | Pfam | C2H2-type zinc finger | 225 | 248 | - | - | |
| Lal23g1226 | 290 | Pfam | C2H2-type zinc finger | 193 | 215 | - | - | |
| Lal23g1226 | 290 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 225 | 247 | IPR013087 | - | |
| Lal23g1226 | 290 | MobiDBLite | consensus disorder prediction | 242 | 269 | - | - | |
| Lal23g1226 | 290 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 211 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lal23g1226 | Lal-Chr23 | 13492428 | 13493300 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lal23g1226 | 1 | 287 | C2H2 Transcription Factor Family | AT3G60580 | 37.736 | 7.85e-47 | 157 |
Transcription factors information