Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1202 AAGAATAACTTAGCCATGGCCCCCATTTTTGAATATTGTAGTTTCTTGTTAATTGCTTTTACATGCATGTTAACATTCATGGGAGAGCCATCAGCAGCATTGCAAGTATTTCAACCTAGTCCATGGGCTCTTGCCCATGCCACATTTTATGGTGATGAGACTGCTTCTGCAACAATGGGAGGAGCATGTGGATATGGGAATTTGTTTCAGAATGGTTATGGAACAGATACAGTGGCATTGAGTTCAACGTTGTTTAACAATGGATATTCATGTGGGAACTGTTACCAGATAAAATGTTACCAGTCAAGTGCATGCTATGGAAATGTGCCCTACGTCACGGTCACTGCCACAAACCTTTGTCCTCCTAATTGGGCAGAAGCCTCTGATAATGGTGGGTGGTGTAACCCTCCAAGAGCACATTTTGACATGTCCAAACCTGTCTTCATGAAATTTGCTCAGTGGAAGGCTGGTATTGTCCCTGTTATGTACCGCAGGGTGGCATGTGGGAGAAAGGGAGGGATTAGATTTTCATTTCAAGGAAATGGGTATTGGCTATTGGTGTATGTGATGAATGTGGGAGGAGTAGGAGACATATCAAGCATGTCAGTGAAAGGAAGCAGAACAAGATGGATTAGCATGAGCCACAATTGGGGTGCATCTTATCAAGCTTTTGCAACTCTTGGTGGCCAATCTATTTCTTTCAGGATTACTTCATATACTAATAAACAGACTATTTATGCTTGGAATGTTGCTCCTTCCAATTGGAACGTAGGATTAACTTATTCTGCCAATGTCAACTTCCACTGA 807 0.4213 KNNLAMAPIFEYCSFLLIAFTCMLTFMGEPSAALQVFQPSPWALAHATFYGDETASATMGGACGYGNLFQNGYGTDTVALSSTLFNNGYSCGNCYQIKCYQSSACYGNVPYVTVTATNLCPPNWAEASDNGGWCNPPRAHFDMSKPVFMKFAQWKAGIVPVMYRRVACGRKGGIRFSFQGNGYWLLVYVMNVGGVGDISSMSVKGSRTRWISMSHNWGASYQAFATLGGQSISFRITSYTNKQTIYAWNVAPSNWNVGLTYSANVNFH 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1202 268 PANTHER EXPANSIN 7 268 - -
Lal23g1202 268 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 173 IPR007112 -
Lal23g1202 268 Gene3D - 169 268 IPR036749 -
Lal23g1202 268 Gene3D - 28 168 IPR036908 -
Lal23g1202 268 Pfam Expansin C-terminal domain 174 252 IPR007117 -
Lal23g1202 268 PANTHER EXPANSIN-A15 7 268 IPR002963 GO:0009664
Lal23g1202 268 Pfam Lytic transglycolase 77 163 IPR009009 -
Lal23g1202 268 PRINTS Expansin signature 72 86 IPR002963 GO:0009664
Lal23g1202 268 PRINTS Expansin signature 112 122 IPR002963 GO:0009664
Lal23g1202 268 PRINTS Expansin signature 131 148 IPR002963 GO:0009664
Lal23g1202 268 PRINTS Expansin signature 148 161 IPR002963 GO:0009664
Lal23g1202 268 PRINTS Expansin signature 172 184 IPR002963 GO:0009664
Lal23g1202 268 PRINTS Expansin signature 184 205 IPR002963 GO:0009664
Lal23g1202 268 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Lal23g1202 268 SUPERFAMILY PHL pollen allergen 170 262 IPR036749 -
Lal23g1202 268 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Lal23g1202 268 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Lal23g1202 268 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Lal23g1202 268 PRINTS Expansin/Lol pI family signature 156 172 IPR007118 GO:0005576
Lal23g1202 268 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Lal23g1202 268 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Lal23g1202 268 SUPERFAMILY Barwin-like endoglucanases 41 191 IPR036908 -
Lal23g1202 268 SMART dpbb_1 77 163 IPR007112 -
Lal23g1202 268 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 183 263 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1202 Lal-Chr23 13331852 13333717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1202 23 268 Expansin Gene Family AT1G62980 64.228 4.87e-123 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1202 - - lang:109349912 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1202 23 13331852 13333717 Lal23g1202 23 13331852 13333717 ECH