Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1198 ATGCAAGAACCAAACTTGGGAATGATGGGTGGTGGTTTGGGCGGAGACGGCGGCGACACCCAACACCGACAACTGAAGGCGGAGATAGTTACTCACCCTCTATATGAGCAGCTTCTAGCAGCACACGTAGCATGTCTCAGAGTTGCAACTCCAATAGATCAATTACCACTCATTGATGCTCAGTTATCACAGTCTCACCATCTTCTTCGCTCTTATCTTTCTCAACAAACTCATTCTCTTTCACCTCACCATCGCCAAGACCTTGACAACTTCATGGAACAATATTTGATAGTGTTGTGTACTTTCAAAGAACAGCTTCAACAACATGTCAGAGTCCATGCCGTCGAGGCTGTCATGGCTTGCCGTGACATTGAAAATACCTTACAATCTCTCACAGGAGTGGGTTTGGGAGAAGGAAGTGGTGCAACAATGTCAGATGATGAAGATGAAATGCAAATGGATTTCTGTTTAGATCAGTCTACCGCTGAAGGCCATGACATGATGGGATTTGGACTTCCTACTGAATCTGAAAGATCACTTATGGAAAGAGTTCGTCAGGAACTCAAGATTGAACTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGAGAGGAAATATTAAGGAAAAGAAGAGCTGGAAAATTACCAGGTGACACAACTTCAGTGTTAAAGAACTGGTGGCAGCAACATGCCAAGTGGCCATACCCAACTGAAGATGACAAGGCAAAACTTGTGGAAGAGACAGGTTTGCAGCTGAAGCAAATCAACAATTGGTTCATCAATCAAAGGAAACGCAACTGGCATAGCAACTCTCACTCCGTCACCTCTTTGAAGTCCAAGCGCAAGAGATAG 855 0.4409 MQEPNLGMMGGGLGGDGGDTQHRQLKAEIVTHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHLLRSYLSQQTHSLSPHHRQDLDNFMEQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIENTLQSLTGVGLGEGSGATMSDDEDEMQMDFCLDQSTAEGHDMMGFGLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSHSVTSLKSKRKR 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1198 284 ProSiteProfiles ELK domain profile. 187 207 IPR005539 GO:0003677
Lal23g1198 284 Pfam KNOX2 domain 82 132 IPR005541 GO:0003677|GO:0005634
Lal23g1198 284 Pfam KNOX1 domain 25 66 IPR005540 GO:0003677|GO:0005634
Lal23g1198 284 Gene3D - 206 279 - -
Lal23g1198 284 Pfam Homeobox KN domain 227 266 IPR008422 GO:0003677|GO:0006355
Lal23g1198 284 SMART KNOX2_2 78 133 IPR005541 GO:0003677|GO:0005634
Lal23g1198 284 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 284 - -
Lal23g1198 284 SUPERFAMILY Homeodomain-like 209 273 IPR009057 -
Lal23g1198 284 CDD homeodomain 210 271 IPR001356 GO:0003677
Lal23g1198 284 SMART KNOX1_2 23 67 IPR005540 GO:0003677|GO:0005634
Lal23g1198 284 SMART HOX_1 209 274 IPR001356 GO:0003677
Lal23g1198 284 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 2 284 - -
Lal23g1198 284 ProSiteProfiles 'Homeobox' domain profile. 207 270 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1198 Lal-Chr23 13308298 13311677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1198 1 283 Homeobox Transcription Factor Family AT1G62990 79.252 2.19e-168 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lal23g1198 KNOX2 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1198 - - gmx:100787023 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1198 23 13308298 13311677 Lal23g1198 23 13308298 13311677 ECH