Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1197 ATGGCTCATTTGGTTTATAATGAAACTCCTTCTTTCGGAGCCTCACACCATGGCCAGGCTCAACAAATTATTCCATTCCCAACCACCACTTCCACTTCCTTAAGAATTATCCTCTTACATGGCAACTTAGAAATATGGGTCAACCACGCCAAAAACCTTCCTAACTTGGACAAATTTCACAGGACATTGGGAGACATATTATCCTTACCTAAGAAACTTGGTGGCACAATTGAAACAAGTGATCCATATGTCACTGTTTCTGTAGGGGGTGCTGTTATTGCCAGGACTTTTGTGATTGAAAACGATGAGAATCCTATTTGGATGCAGCATTTCAATGTCCCTGTTGCACATCATGCCTCTGAAGTTCACTTCCTTGTAAAGGATAGTGATATTGTTGGATCACAGTTGATAGGTGCTGTAGGAATTCCAGTTCAAGATTTATATAATGGTACAAAAGTTGAAGGCTTTTACCCTATCCTTAGTTCTAGTGGCAAGCCTTGTAAGGATGGAGCAGTGTTGAGTTTATCCATTCAATATACTCCTATTGATAAGGTGACCCTTTATAATCATGGTGTAGGTGTTGGTCCTAATTATCAAGGTGTCCCTGCTACATACTTTCCCCTCAGAAAAGGTGGGAAGGTAACACTTTATCAAGATGCTCATTTTCATGAAGGCTGCATCCCCAATTTCAAGCTTAAAGGGGGTGTGAATTATGAGCATAGAAGTTGCTGGCATGATATCTTTGATGCAATTAGTCAGGCCCGTAGATTAGTTTATATCGTGGGGTGGTCTGTGTACTATAATGTTAGTCTGATTCGCGATAATCGTGGTGGAAAAGCCTCGAATTTAGGTGATCTTCTCAAAGCTAAATCACAAGAAGGTGTGAGAGTGTTGCTCCTTGTGTGGGATGATCCTACTTCTGGAAGCTTTCTTGGACAAAGGACGGTTGGACTTATGGATACTCATGATGAAGACACTCGCCGATTTTTCAAGCACTCTTCAGTACAAGTGCTTCTTTGCCCACGTGGTGGTGGAAAAGGACATAGCTGGCTTAAAACACAGGAAGCTGGAACAATCTATACCCATCATCAGAAGACAGTCATTGTAGATGCTGATGCAGGTCAGAATAGAAGAAAGATTGTAGCTTTCATAGGGGGTCTTGACTTATGTCTGGGCCGATATGATACACCAACACATTCTCTCTATAGGACCTTACAAACAACACACAAAGATGACTATCATAATCCTAATTTTGAGGCTAAGCTGGGTCCTGTTACTGGTTGTCCAAGAGAACCATGGCATGATTTGCACTCCAAAATTGATGGTCCTGCTGCATATGACATCCTCACCAATTTTGAGGAGCGTTGGTTAAAGGCAACAAAAAAGAGCAGACTTCATAGGATCAAAAGTTCTCATGATGATTCATTGCTAAAAATTGATAGAATCCCTGACATTATTGGTATTGATGAAGCTTCAAGCCTAGATAAACATAACCCGGAAATATGGCACGTCCAGGTATTCCGTTCAATTGATTCCAATTCTGTGAAAGGATTTCCAAAGGAACCGAAAGATGCTATACAAAGGAACTTGGTTTGTGGAAAGAATGTAGTCATAGACATGAGCATACATTCTGCATATGTAAAGGCAATCCGCTCTGCCCAAAAGTTCATCTATATTGAGAACCAATACTTTATTGGCTCATCATTTAATTGGGATTCTCAGAAAGACCTTGGTGCAAACAACTTAATTCCAATGGAAATTGCACTAAAAATAGCCAACAAAATCAAACATCATGAGAGATTCGCTGTGTATGTTGTAATTCCCATGTGGCCTGAAGGTGTACCCACAAGTGTATCCACTCAGCGGATTCTCTTTTGGCAGTTCAAAACAATGCAAATGATGTATGAAACGATTTACAAGGCCTTACAGGAGGCTGGGCTCGACAAAGAGCATGAACCACAAGACTACTTGAATTTCTTTTGTCTTGGAAATCGTGAGATCTCTGATAATAATGAGAAATTTTCAAATGCTGCAAAACGTAATGGACAAAACACTCCTCAGGTGCATGGTTATAGAATGTCACTATGGAGTGAGCATATTGGAAGCATGGAAAAATGTTTTGAGGAACCAGAGAGATTGGAATGTGTAAGAAGGTTAAGGTCATTGGGTGAGTTTAACTGGAAACAATATGCATCTGATGAAGTAACAGAAATGAAAAGTCATATATTGAAATATCCACTTGAAGTTGATTCAAAGGGTAAGGTCAAGCCTCTTCCTGGCTCTGAGACATTCCCAGATGTTGGTGGCAATATAAAGGGAACATTTGTAATAGTTCAAGAGAATCTTACCATCTAA 2355 0.4013 MAHLVYNETPSFGASHHGQAQQIIPFPTTTSTSLRIILLHGNLEIWVNHAKNLPNLDKFHRTLGDILSLPKKLGGTIETSDPYVTVSVGGAVIARTFVIENDENPIWMQHFNVPVAHHASEVHFLVKDSDIVGSQLIGAVGIPVQDLYNGTKVEGFYPILSSSGKPCKDGAVLSLSIQYTPIDKVTLYNHGVGVGPNYQGVPATYFPLRKGGKVTLYQDAHFHEGCIPNFKLKGGVNYEHRSCWHDIFDAISQARRLVYIVGWSVYYNVSLIRDNRGGKASNLGDLLKAKSQEGVRVLLLVWDDPTSGSFLGQRTVGLMDTHDEDTRRFFKHSSVQVLLCPRGGGKGHSWLKTQEAGTIYTHHQKTVIVDADAGQNRRKIVAFIGGLDLCLGRYDTPTHSLYRTLQTTHKDDYHNPNFEAKLGPVTGCPREPWHDLHSKIDGPAAYDILTNFEERWLKATKKSRLHRIKSSHDDSLLKIDRIPDIIGIDEASSLDKHNPEIWHVQVFRSIDSNSVKGFPKEPKDAIQRNLVCGKNVVIDMSIHSAYVKAIRSAQKFIYIENQYFIGSSFNWDSQKDLGANNLIPMEIALKIANKIKHHERFAVYVVIPMWPEGVPTSVSTQRILFWQFKTMQMMYETIYKALQEAGLDKEHEPQDYLNFFCLGNREISDNNEKFSNAAKRNGQNTPQVHGYRMSLWSEHIGSMEKCFEEPERLECVRRLRSLGEFNWKQYASDEVTEMKSHILKYPLEVDSKGKVKPLPGSETFPDVGGNIKGTFVIVQENLTI 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1197 784 Gene3D Endonuclease Chain A 505 689 - -
Lal23g1197 784 SUPERFAMILY Phospholipase D/nuclease 198 465 - -
Lal23g1197 784 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 39 182 IPR035892 -
Lal23g1197 784 SMART C2_3c 42 156 IPR000008 -
Lal23g1197 784 Pfam Phospholipase D Active site motif 359 393 IPR001736 GO:0003824
Lal23g1197 784 Pfam C2 domain 41 159 IPR000008 -
Lal23g1197 784 Gene3D C2 domain 36 169 IPR035892 -
Lal23g1197 784 Gene3D Endonuclease Chain A 231 480 - -
Lal23g1197 784 Pfam Phospholipase D C terminal 704 774 IPR024632 -
Lal23g1197 784 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 358 393 IPR001736 GO:0003824
Lal23g1197 784 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 679 784 - -
Lal23g1197 784 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 8 677 - -
Lal23g1197 784 ProSiteProfiles C2 domain profile. 23 157 IPR000008 -
Lal23g1197 784 PANTHER PHOSPHOLIPASE D 8 677 IPR015679 -
Lal23g1197 784 PANTHER PHOSPHOLIPASE D 679 784 IPR015679 -
Lal23g1197 784 SUPERFAMILY Phospholipase D/nuclease 542 623 - -
Lal23g1197 784 PIRSF PLD_plant 673 784 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal23g1197 784 PIRSF PLD_plant 28 686 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Lal23g1197 784 CDD C2_plant_PLD 37 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1197 Lal-Chr23 13301703 13307196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1197 678 784 Phospholipase D Gene Family (Wang group) AT2G42010 60.748 4.60e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1197 K01115 - gmx:100786241 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1197 23 13301703 13307196 Lal23g1197 23 13301703 13307196 ECH
Lal16g0125 16 721005 728046 Lal23g1197 23 13301703 13307196 LSH