Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1188 ATGACACGTGCTCTTAGATTCCTTACAGGCAACGAAACGGCGGTGGCAGAGGCTGTGTCGCCGGCGGGAGCGAAAGACTTAGAATCCGATTTCGTAGTGATTCTAGCGTCGCTTCTCTGTGCAATCATATGCGTGGTGGGGTTCATCGTTGTATCACGCTGCCCTTGGCTCCGACAAGGCACCGGGAACTCGCCGGCGCAAGCCCTGGCGAACAAAGGGCTGAAGAAAAAGGTGCTGCAATCGCTTCCGAAGTTCACTTACATAGACAGTAACCCGAGTAAGTGGTTGGCGATGCCGGAATGCGCTATTTGCCTGTCGGATTTCGCCGGCGGCGACGAGATCCGGGTGCTACCGCAGTGCGGACATGGGTTCCACGTGGGATGCATAGACACGTGGCTTAAGTCTCATTCGTCGTGCCCTTCATGTCGGCAGGTCCTTGCGGCGGATAGGTGCCAGAAGTGTGGTCGGTTACCGGCAGTTGACGGTGGCAGCACAACCAACGGTGTGGAGGTTAATGAAACGGAGATGAAGTCAAGAGAAGACAACAATGGCACTGTTAGTAATAATAATAAAAAAAGCAGCGAAAGCAGTTGTAGTAACATGGTGGGTCATCATAGCCATAACGATAGCAGTAATTTTCTGCCATGA 648 0.5278 MTRALRFLTGNETAVAEAVSPAGAKDLESDFVVILASLLCAIICVVGFIVVSRCPWLRQGTGNSPAQALANKGLKKKVLQSLPKFTYIDSNPSKWLAMPECAICLSDFAGGDEIRVLPQCGHGFHVGCIDTWLKSHSSCPSCRQVLAADRCQKCGRLPAVDGGSTTNGVEVNETEMKSREDNNGTVSNNNKKSSESSCSNMVGHHSHNDSSNFLP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1188 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 148 IPR013083 -
Lal23g1188 215 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lal23g1188 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 179 - -
Lal23g1188 215 SMART ring_2 101 142 IPR001841 -
Lal23g1188 215 MobiDBLite consensus disorder prediction 162 215 - -
Lal23g1188 215 CDD RING-H2_PA-TM-RING 100 143 - -
Lal23g1188 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 179 - -
Lal23g1188 215 SUPERFAMILY RING/U-box 79 148 - -
Lal23g1188 215 MobiDBLite consensus disorder prediction 181 215 - -
Lal23g1188 215 Pfam Ring finger domain 100 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1188 Lal-Chr23 13239991 13240638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1188 1 181 C3H Transcription Factor Family AT1G76410 53.927 7.61e-58 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1188 - - gmx:100787383 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0367 16 2211371 2212024 Lal23g1188 23 13239991 13240638 LSH
Lal15g0305 15 2039303 2039950 Lal23g1188 23 13239991 13240638 LSH
Lal23g1188 23 13239991 13240638 Lal15g1552 15 17531089 17531730 PCT
Lal23g1188 23 13239991 13240638 Lal16g1804 16 17148228 17148821 PCT
Lal15g1552 15 17531089 17531730 Lal23g1188 23 13239991 13240638 PCT
Lal16g1804 16 17148228 17148821 Lal23g1188 23 13239991 13240638 PCT