Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1182 ATGAGTGATTCAAAAGTAAACGAGGAAGGTGGCCAGGGCAAGCTCATGGATGTGGAAGAAAGCCACCAGTTTGTTGATGCAGAGGTTCAAGTTGAACCCAAAGCACCTTCATCTAATGATGCAGTAAATCATGTGGAAACTGGAAAGGCATACCCTCCTGCACAGGATGAAATTGTGAAGCCAGAGAAGCCAGATCTGATTGCTGAGGACGAAAATGTGAAGCCAGGGAAGGCGGAGCCACCTGTTGTGGATAATAGTCAGAAGCCAGTAAAGGCACAGCCACTTATTGATGGTGAAAGTGTGAATCCAGGGAAGGCGAAGCCATCTGCTGAGGATGACATCGTGCAACCAGTAATGGCAGAGCTTGTTGTTGAGCATAAAAGTTTGAATGCAGGGAAGGAAGAGCTACCTGTTGTGGATAATAGTGTGAAACAAGAGAAGGTAGAGATACCTGCTGAGGATAATCGTGTGGAGCCCCAGGGTGTTTTAGGGGGCATTCCACAACAAGATGCTCAAAATGCTCTTCACTTGGCCCCATTTGAGTTTGATGCTCAGATTTCAAATATAATTGTGGGTGAGGTAGTTTTTAACGTGAAGACAAATGCTGATAAATTTTCTCAGAGTAATACAGACATCAAGAATGATGATAACAATTGTCGAAATAATGTTGATGCTGCTGAAACTGCTGTGGAGGTGATGCCTGAAGCTCGTGAAGTGGTTGATAGTAAGCTCTGTGATAATGTGGATGAGCCTACTCCACTGCAAGCTGTTCCCGCTGATACAAAAGCTGAGATAAAGAATGAATTACAAGTTGCGAATAAGATTAATGAAGAGCTAGCTGTTGAACTTGCAGTTAATGGGAACTCAAACTCAAAGCAGATATCTTTCTTGAACGCAGACCATTGTTATGATGGTAACGAGTCTGGAACAGATGAGGAGCAATCAGCTTTTATGAAGGAGCTGGAAAATTTCTTCAGGGAAAGGAGCATGGAATTCAAGCCTCCCAAATTTTATGGAGAAGGACTCAATTGCCTAAAGTTATGGAGATCTGTGATTAGATTGGGTGGCTATGATAAGGTAACCTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCCTTCAAACCTCCAAAGACATGCACCACAGTTTCATGGACTTTTCGAGGATTCTACGAGAAGGCACTTCTTGATTACGAAAGGCATAAAATAAATGGTGGGGAGCTGGATATGCCCATTACTGCTGCTGCTGCTGCTCCTGCTTCTCACCCAGAGCCTGTGACTATTGAAAATCAGGCTTCAGCATCAGGTAGAGCGCGAAGAGACGCTGCAGCACGAGCTATGCAAGGTTGGCACTCACAACGTCTCCTAGGCAACGGAGAAGTTAGTGACCCTATTATTAAGGATAGGAATTATGCATCTATGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTACTTAAACGTAAGAAACCATCTTACATGGATAATGCAGTCAAAGCAGCTAGAAGTAAACCATCTAAACCACAATTGGACACTGCTGTGGTTGATGTTGGACCCCCTGCTGATTGGGTAAAAATCAATGTTCAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGCGAAGAGGTGCATGTTCAATCAGACCCAGCAGGACGCTTGGTCATAAGTGGTGAGCCTGAGAAACCTGATAATCCCTGGGGTGTGACACCCTTCAAAAAGGTTGTCAGCTTACCCTCAAGAATTGATCCTCATCAGACATCTGCTGTCGTGACGCTGCATGGACAGTTGTTTGTTCGCGTCCCGTTCGAGCAAGCAGAATAG 1839 0.4426 MSDSKVNEEGGQGKLMDVEESHQFVDAEVQVEPKAPSSNDAVNHVETGKAYPPAQDEIVKPEKPDLIAEDENVKPGKAEPPVVDNSQKPVKAQPLIDGESVNPGKAKPSAEDDIVQPVMAELVVEHKSLNAGKEELPVVDNSVKQEKVEIPAEDNRVEPQGVLGGIPQQDAQNALHLAPFEFDAQISNIIVGEVVFNVKTNADKFSQSNTDIKNDDNNCRNNVDAAETAVEVMPEAREVVDSKLCDNVDEPTPLQAVPADTKAEIKNELQVANKINEELAVELAVNGNSNSKQISFLNADHCYDGNESGTDEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRSVIRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKINGGELDMPITAAAAAPASHPEPVTIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNYASMQKREKQLKSINLLKRKKPSYMDNAVKAARSKPSKPQLDTAVVDVGPPADWVKINVQKTKDCFEVYALVPGLLREEVHVQSDPAGRLVISGEPEKPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQAE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1182 612 MobiDBLite consensus disorder prediction 56 77 - -
Lal23g1182 612 ProSiteProfiles ARID domain profile. 311 402 IPR001606 GO:0003677
Lal23g1182 612 Coils Coil 262 282 - -
Lal23g1182 612 SMART ARID_2 308 398 - -
Lal23g1182 612 CDD ACD_sHsps-like 527 607 - -
Lal23g1182 612 Gene3D - 508 612 IPR008978 -
Lal23g1182 612 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 52 611 - -
Lal23g1182 612 CDD ARID 313 398 - -
Lal23g1182 612 SUPERFAMILY HSP20-like chaperones 521 608 IPR008978 -
Lal23g1182 612 Pfam Hsp20/alpha crystallin family 529 610 IPR002068 -
Lal23g1182 612 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 52 611 IPR045147 GO:0006357
Lal23g1182 612 SMART bright_3 312 403 IPR001606 GO:0003677
Lal23g1182 612 Gene3D - 311 408 IPR036431 GO:0003677
Lal23g1182 612 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 512 612 IPR002068 -
Lal23g1182 612 Pfam ARID/BRIGHT DNA binding domain 314 398 IPR001606 GO:0003677
Lal23g1182 612 SUPERFAMILY ARID-like 306 411 IPR036431 GO:0003677
Lal23g1182 612 MobiDBLite consensus disorder prediction 31 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1182 Lal-Chr23 13187642 13194182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1182 306 610 ARID Transcription Factor Family AT1G76510 65.246 9.07e-133 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal23g1182 HSP20 4.7e-06 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1182 - - lang:109348972 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0311 15 2074693 2082221 Lal23g1182 23 13187642 13194182 LSH