Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1174 ATGCCACAAAACTGCATAGCACCAAAACCACAATATTCCAATAGTATTCATATGGATGAACCACCAGAGCTCACTGAGCCCTATAATCCAAGTCTCCTTGCCACTATGTACCCCATAACTTTGAAGTTTAAGGAAGTGGTGTACAAAGTTAAACTGGAGAGGAAAGGACTATGTTGGGGGAGCACATGGACTTGCAAAGAGAAAACCATATTGAATGGGATTTCAGGTGTGGTATGCCCAGGAGAAATACTTGCTATGTTAGGGCCATCAGGTAGTGGCAAAACCACACTTCTTACAGCTCTCGGCGGCCGCCTCGACCGCAAAATATCCGGAGAGATCACATACAACAATCACCCTTTCTCAGGCTCCATAAAGAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATATCCTCATCTCACTGTCACTGAGACTCTAGTCTTCACTGCACTTCTAAGGCTTCCTAACAGCTTAACAAGAGATGAAAAAGTTGAGCACGTAGAGAGAGTTATTGCTGAGCTAGGACTCACTAGGTGCAGGAGCAGCATGATTGGAGGCCCAATGTTCAGAGGAATATCAGGTGGTGAGAAAAAGAGAGTGAGTATAGGCCAAGAAATGCTCATCAATCCAAGCCTGTTATTGCTGGATGAGCCTACTTCAGGTTTGGATTCCACCACAGCTCTAAGGATTCTCAGCACAATCAAACGACTCGCGAGTGGTGGTAGAACTGTTATCACCACCATTCATCAACCCTCGAGCCGCCTCTACTATATGTTTGATAAGGTGGTCTTGCTCTCTGAAGGGTGCCCTATCTATTATGGTCTTGCTTCAACTGCCTTGGACTACTTTTCATCAATTGGCTTTTCTACATGTGTGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGCCCCTGATTCCAAGCATGCAACTGAACAAAGTGAGAGCCTGGAACAAGAAAGGAAGGTGGTAAGAGAAGCTCTCATATCTGCATATGACAAGAACATAGCTACTAGGCTGAAAGCTGAGCTTTGCAGCCTGGAGGTGAAAAATCACAATATCACAGAAGATGCTTGCACAAAGAGTCACACAAAACATGAGCAATGGTGCACAAGCTGGTGGCATCAGTTCAAGGTACTATTACAAAGGGGAGTGAGGGAAAGAAGGCATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTCGTAAGTGTCGCTTTTCTTGGCGGACTTTTATGGTGGCATACACCAGAATCACACATTCAAGACCGGGTGGCCTTGATCTTTTTCTTCTCAGTTTTCTGGGGATTCTACCCTCTCTACAATGCAGTTTTCACATTTCCTCAAGAAAGGAGAATGCTGATCAAGGAACGGTCATCGGGAATGTACCGGCTTTCATCCTACTTTCTAGCTAGAACAATAGGAGACTTACCACTTGAGCTTGCACTTCCAACAGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTGTGACCTTTATCCTTTCTCTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGTCTTGGCCTAGCATTTGGTGCTATCCTGATGGAAGTTAAACAAGCAACTACTCTAGCTTCTGTGACAACTTTTGTTTTTCTCATTGCTGGAGGATACTATATACAACAAATTCCACCCTTCATAGTTTGGCTCAAGTACTTGAGCTATAGCTACTACTGTTACAAGTTACTTCTTGGTGTCCAGTACAATGATGATGATTATTATGAGTGCTCAAAAGGGGTCTTATGCAAGGTTATAGATTTTCCTCCTATAAAATCAGTGGGTTTGAATCATATGTGGGCTGATGTGTCCATTATGGCACTGATGTTACTCGGTTATCGACTAGTCGCTTATTTAGCGCTGCGTAGAGTGAAGTAG 1929 0.4381 MPQNCIAPKPQYSNSIHMDEPPELTEPYNPSLLATMYPITLKFKEVVYKVKLERKGLCWGSTWTCKEKTILNGISGVVCPGEILAMLGPSGSGKTTLLTALGGRLDRKISGEITYNNHPFSGSIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLTRDEKVEHVERVIAELGLTRCRSSMIGGPMFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILSTIKRLASGGRTVITTIHQPSSRLYYMFDKVVLLSEGCPIYYGLASTALDYFSSIGFSTCVTVNPADLLLDLANGIAPDSKHATEQSESLEQERKVVREALISAYDKNIATRLKAELCSLEVKNHNITEDACTKSHTKHEQWCTSWWHQFKVLLQRGVRERRHEAFNRLRIFQVVSVAFLGGLLWWHTPESHIQDRVALIFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPVTFILSLLVVLYSVVVSQSLGLAFGAILMEVKQATTLASVTTFVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNDDDYYECSKGVLCKVIDFPPIKSVGLNHMWADVSIMALMLLGYRLVAYLALRRVK 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1174 642 SMART AAA_5 80 270 IPR003593 -
Lal23g1174 642 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524
Lal23g1174 642 CDD ABCG_EPDR 38 275 - -
Lal23g1174 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 285 IPR027417 -
Lal23g1174 642 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 640 - -
Lal23g1174 642 Pfam ABC transporter 71 221 IPR003439 GO:0005524
Lal23g1174 642 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 31 640 - -
Lal23g1174 642 MobiDBLite consensus disorder prediction 1 21 - -
Lal23g1174 642 Gene3D - 60 286 IPR027417 -
Lal23g1174 642 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 293 IPR003439 GO:0005524
Lal23g1174 642 Pfam ABC-2 type transporter 381 586 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1174 Lal-Chr23 13125679 13128510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1174 70 269 Calmodulin-binding Proteins AT2G36910 29.187 1.18e-11 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1174 23 13125679 13128510 Lal23g1174 23 13125679 13128510 ECH
Lal16g0380 16 2299106 2302225 Lal23g1174 23 13125679 13128510 LSH
Lal15g0322 15 2165013 2168050 Lal23g1174 23 13125679 13128510 LSH