Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1171 ATGTCTGATCGATTGACTCGTATCGCTATCGTCAGCAATGACAGGTGCAAGCCCAAAAAGTGTCGTCAGGAGTGTAAGAAAAGTTGCCCTGTCGTCAGAACCGGTAGATTGTGTATTGAGGTTTCTCACACATCTAAGATTGCTTTCATATCTGAGGAATTGTGCATTGGATGTGGTATCTGTGTTAAGAAATGTCCCTTTGAAGCCATCCAAATTATCAACTTGCCGAAGGATTTGGACAAAGATACCACTCATAGATATGGTCCTAATACTTTTAAGCTGCATAGGTTGCCTGTGCCAAGGCCTGGGCAAGTGCTTGGGTTGGTTGGGACTAATGGAATTGGGAAGTCCACTGCCCTTAAAGTTTTGGCTGGGAAATTGAAACCGAACTTGGGTCGCTTCACCAATCCCCCTGATTGGCAGGAAATTTTAACATATTTTCGAGGATCTGAATTGCAGAATTACTTCACTCGTATTCTGGAGGATGATTTGAAGGCTATCATCAAGCCCCAGTATGTTGACCACATTCCAAAAGCTGTGCAAGGAAATGTGGGGCAGGTGCTTGATCAGAAAGACGAGAGAGATGCTAAAGCCGAGCTTTGTGCTGATCTTGAGCTTAACCAGGTTATAGATCGCAATGTTGGTGATCTTTCTGGTGGAGAGCTCCAAAGGTTTGCCATTGCGGTTGTTGCCATCCAGCATGCTGAGATATACATGTTTGATGAACCTTCTAGTTATCTTGATGTGAAACAGAGACTGAAAGCTGCCCAAGTTATTCGATCATTGCTCAGACCAAATAGCTATGTAATTGTTGTGGAGCACGACCTAAGTGTCTTAGATTACTTATCAGACTTTATTTGCTGTTTGTATGGCAAACCTGGTGCATATGGAGTTGTAACACTTCCTTTCTCAGTCAGAGAAGGGATTAATATCTTCTTATCTGGCTTTGTTCCAACAGAAAATCTTAGGTTCCGGGAAGAGTCTCTTACCTTCAAGGTTGCCGAGACTCCACAGGAAACTGCAGAGGAAGCTCAGTCATATGCTCGATACAAATACCCAACCATGACCAAAACTCAAGGAAATTTCAAGCTTCGTGTTGTTGAAGGAGAATTTACTGATTCTCAGATTGTTGTGATGCTGGGTGAGAATGGGACAGGAAAGACAACATTTATTCGTATGCTGGCTGGTTTACTGAAACCTGATGCTATAGAAGGTGGATCTGATGTGGATATGCCTGAGTTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCAAAATTCCAATCAACTGTTAGAAGCTTGCTACATCTAAAAATACGTGAGGCATATACTCATCCCCAGTTTATATCAGATGTGATGAAGCCACTTCTTATTGAACAATTAATGGACCAAGAAGTTGTGAATCTCTCCGGTGGAGAGTTGCAAAGAGTTGCTTTATGTCTCTGTCTCGGAAAGCCTGCAGATATCTATCTGATAGATGAGCCAAGTGCATATCTTGATTCTGAACAGCGAATTCATGCGGCTAAAGTCATCAAGAGGTTTATTCTTCATGCAAAGAAAACTGCTTTTGTGGTTGAGCATGATTTCATCATGGCAACTTATCTTGCTGACAGAGTTATTGTTTATGAGGGTCAACCATCAATTGATTGTACTGCAAATTGTCCACAATCTTTGTTGAGTGGGATGAACCTTTTCTTATCACATCTTGATATCACATTTAGAAGAGACCCAACTAATTTTCGCCCAAGGATCAACAAACTTGATTCAACGAAAGACAGAGAACAAAAGAATGCAGGGTCTTATTATTACCTTGATGACTGA 1821 0.4152 MSDRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVSHTSKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDAKAELCADLELNQVIDRNVGDLSGGELQRFAIAVVAIQHAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLSGFVPTENLRFREESLTFKVAETPQETAEEAQSYARYKYPTMTKTQGNFKLRVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDAIEGGSDVDMPEFNVSYKPQKISPKFQSTVRSLLHLKIREAYTHPQFISDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSIDCTANCPQSLLSGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKNAGSYYYLDD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1171 606 Gene3D - 335 604 IPR027417 -
Lal23g1171 606 PANTHER - 1 606 - -
Lal23g1171 606 Gene3D - 1 332 IPR027417 -
Lal23g1171 606 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 606 IPR013283 -
Lal23g1171 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 348 569 IPR003439 GO:0005524
Lal23g1171 606 PRINTS ABC transporter family E signature 24 39 IPR013283 -
Lal23g1171 606 PRINTS ABC transporter family E signature 52 76 IPR013283 -
Lal23g1171 606 PRINTS ABC transporter family E signature 79 99 IPR013283 -
Lal23g1171 606 PRINTS ABC transporter family E signature 107 132 IPR013283 -
Lal23g1171 606 PRINTS ABC transporter family E signature 140 156 IPR013283 -
Lal23g1171 606 PRINTS ABC transporter family E signature 156 182 IPR013283 -
Lal23g1171 606 Pfam ABC transporter 367 497 IPR003439 GO:0005524
Lal23g1171 606 Pfam ABC transporter 102 244 IPR003439 GO:0005524
Lal23g1171 606 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 46 75 IPR017896 -
Lal23g1171 606 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 6 37 IPR007209 -
Lal23g1171 606 ProSitePatterns ABC transporters family signature. 469 483 IPR017871 GO:0005524
Lal23g1171 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 291 IPR027417 -
Lal23g1171 606 CDD ABC_RNaseL_inhibitor_domain2 350 599 - -
Lal23g1171 606 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 70 315 IPR003439 GO:0005524
Lal23g1171 606 Pfam 4Fe-4S binding domain 49 71 IPR017896 -
Lal23g1171 606 CDD ABC_RNaseL_inhibitor_domain1 78 332 IPR034348 -
Lal23g1171 606 SMART AAA_5 373 547 IPR003593 -
Lal23g1171 606 SMART AAA_5 102 294 IPR003593 -
Lal23g1171 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 543 IPR027417 -
Lal23g1171 606 SUPERFAMILY 4Fe-4S ferredoxins 6 145 - -
Lal23g1171 606 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 55 66 IPR017900 -
Lal23g1171 606 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1171 Lal-Chr23 13099916 13104916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1171 350 527 Calmodulin-binding Proteins AT2G36910 23.469 5.31e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1171 K06174 - gmx:100797423 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1171 23 13099916 13104916 Lal23g1171 23 13099916 13104916 ECH
Lal16g0383 16 2308860 2319165 Lal23g1171 23 13099916 13104916 LSH
Lal15g0327 15 2199433 2203875 Lal23g1171 23 13099916 13104916 LSH