Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1166 ATGGGGTCCAGTGGCAGCAAAGACACTTCATCTCGTAGTTCATCGTCGTGTTCTGGTAGTTTCCGAAAGGGTCGATCTAAAAGGCACAGAGGTTTCCAATCTCATTGTTTAGGAACAACATCTGGATCTCATGATTGTGATAATGACGAGGTTTTTGAGCAGAATAAAGTAAATAGAAGTGATGTTACATACACCAGTAACAACGAAATAGATTCAGATCAAGTGAAGATAGATTCTTTTAGAAAAGTTAAATCTGATGAAATGCCTTGCATGCCCTCTAATCTCAACCTTGATGAGTGGGATCACACTGCATCCAGAACCGACAGCAGCTCTGCTCATGCCTCTTCATCTCAGTCTTTGAACCCTTTAAGTCAATTCTTTTCTCGCTTAAGTCTCATTCCCGGTAATATAAGCTTCAGACTTAGCAGAACTACCAGTTTGAGGTCATCGAGGCCTTGTCCTGTTTCTTCTTCCAGCCCCTCAATATTTGACAATGAAAATGAGCTTAATCTGCATCCATGGCGTCCTGCCAGCTTGGCTAATGAAAATGAACCTCAACATGGCAGTGACTCGCTTAACGAATCTTTTGTTAACCGAGTTCCTGTACATTATCATGAAGATGCTTCTAATAATTTAAGATCTATCACCCCAGCACTGGATTCGTCTCAAAACTTGCAGAGAAGTCCAACAATTTATCCTATCCAAGACGTGGTGATAGATGCAGATGGTACAAGAGAAGTGCTGGATTTAAACTTGTTTACTCCACAAATTCATACTGAGTCAGAAAATGTTGAGACTAGACATATTGATAGACGAAATGAAGTTCGAGAACATGTTGAACATAATGTTCATTTTACAAGAACTTTAAGTGTTGGAAGGCTTCGTCATAGAGTTCTCGGTCGATCACAATTATCTGATTTCACCTTTTGCCCTTTGCAACAAGAAAGAGAAGTAAGAGATGCTCGTCAGAATAATGGAAGACAAGTAGGGGAGAGAGATACAATAGTGTCACCATCTGATCCTAATGCTGTAAGTTCTCCTTTCACATCTGCATATCCTCCATCTACTACGTCTAGCTCCTCGCTTACCTTCCAAGAGTATGAGGTCGAGACTTCACAATCAAGAGAAACTAGGTATCAGGATCTACTGGAACATAGATCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCACGGGTTCGTGCTCTTCAGAGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACACGAAAGATCATGCATCTTGTCCGGTCAACTTAGAAATGGTCGTTGCACATGCCGAATCAGCAGTCATGAACGTAGTACCAATTCAAATGATGATACCAATGCTAGAGCTAGTATATCAAGAATTGTTATGTTAGCTGAAGCTTTATTTGAGGTCGTGGATGAAATTCAGCAGCAACCTGCGGTATCATCTTCTCGCCCATCCGTGTCTTCTATTGGATCTGTTCCTGCGCCGAATGAAGTTGTGGAATCCTTGCCTGTTAAATTATACACAAAGTTGAACAAATATCAAGAAGATGCTGTACAATGTTATATATGCCTTGCCGAGTATGAGGATGGAGACAGCATGCGAGTACTGCCTTGTCGTCACGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGGGTATGCCCACTATGTCGCGGTGACATCTGTGTATCTGATTCATTGTCAAGGAAGAACTAA 1722 0.4146 MGSSGSKDTSSRSSSSCSGSFRKGRSKRHRGFQSHCLGTTSGSHDCDNDEVFEQNKVNRSDVTYTSNNEIDSDQVKIDSFRKVKSDEMPCMPSNLNLDEWDHTASRTDSSSAHASSSQSLNPLSQFFSRLSLIPGNISFRLSRTTSLRSSRPCPVSSSSPSIFDNENELNLHPWRPASLANENEPQHGSDSLNESFVNRVPVHYHEDASNNLRSITPALDSSQNLQRSPTIYPIQDVVIDADGTREVLDLNLFTPQIHTESENVETRHIDRRNEVREHVEHNVHFTRTLSVGRLRHRVLGRSQLSDFTFCPLQQEREVRDARQNNGRQVGERDTIVSPSDPNAVSSPFTSAYPPSTTSSSSLTFQEYEVETSQSRETRYQDLLEHRSNFLERRRRMRSRVRALQRLGSRFENLSGHERSCILSGQLRNGRCTCRISSHERSTNSNDDTNARASISRIVMLAEALFEVVDEIQQQPAVSSSRPSVSSIGSVPAPNEVVESLPVKLYTKLNKYQEDAVQCYICLAEYEDGDSMRVLPCRHEFHRTCIDKWLKEIHRVCPLCRGDICVSDSLSRKN 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1166 573 MobiDBLite consensus disorder prediction 1 40 - -
Lal23g1166 573 MobiDBLite consensus disorder prediction 147 167 - -
Lal23g1166 573 MobiDBLite consensus disorder prediction 318 364 - -
Lal23g1166 573 SMART ring_2 518 559 IPR001841 -
Lal23g1166 573 Pfam Ring finger domain 517 560 IPR001841 -
Lal23g1166 573 MobiDBLite consensus disorder prediction 338 364 - -
Lal23g1166 573 SUPERFAMILY RING/U-box 497 566 - -
Lal23g1166 573 MobiDBLite consensus disorder prediction 147 166 - -
Lal23g1166 573 MobiDBLite consensus disorder prediction 1 21 - -
Lal23g1166 573 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 565 IPR013083 -
Lal23g1166 573 ProSiteProfiles Zinc finger RING-type profile. 518 560 IPR001841 -
Lal23g1166 573 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 573 - -
Lal23g1166 573 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1166 Lal-Chr23 13058437 13066195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1166 228 567 C3H Transcription Factor Family AT5G45290 56.000 5.02e-107 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1166 - - lang:109332924 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1166 23 13058437 13066195 Lal23g1166 23 13058437 13066195 ECH
Lal15g0336 15 2272418 2277081 Lal23g1166 23 13058437 13066195 LSH