Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1156 ATGTCCCTTCTCAGAAGATTCTTCTATAAGAGACCCCCAGATGGGTTACTCGAATTCATCGACAGAGTCTATGTTTTTGATTCTTGCTTCTGCACTGAAGCATTACCTGAAGAAATGTACCAACTCTATCTTCACGAAATCGTCTCCGAGTTGCATGAAGAGTTTCCAGAATCTTCTTTTCTCGCTTTCAATTTCCACGAAGGCGAGAAACGAAGCCATTTTGCTGAAATTTTAGTTGAGTATGATGTGACCGTGATGGATTATCCGAAACAGTACGAGAGTGTTCCAGTTCTTCCCTTGTCTCTGGTTCAGCATTTTCTTAGGGTTTGTGAGAGTTGGCTTTCACTTGGGCACCATCAAAATGTGATCTTGTTCCATTGTGAGAGAGGGGGTTGGCCCCTTTTGGCGTTTTTACTTTCAAGCTTTTTGATTTTTAGAAGGGTTCATAGTGGTGAGCGCAAAATACTCAACATGGTTCATAGAGAGGCACCAAAGGGTTTGTTGCGGTTGTTGTCACCTTTTAACCCTTTTCCCTCTCAGCTTCGTTATATTCAGTATGTTGCTAGAAGGAACATTGTCCCGGAGTGGCCCCCACCGGAGCGCGCTTTGTCCCTGGATTGTGTCATTCTTAGAGCAATTCCTAGTTTTGATTCACAAAATGGGTGTAGGCCAATGGTTAGGATTTTTGGTAGGAATTTGCTTAGTAACGGTGGGCTGAAAACTCAGATGATCTATTCCATGCGCAAGAACAAGAAGACCTTGAGGCATTACCGCCAGGCAGACTGTGATGTTATTAAGATCGACATTCAATGTTTCGTGGAAGGAGATGTGGTGTTGGAGTGTGTCCATATGGATTTGAATCCGGAGAGAGAAGTGATGATGTTTCGTGTAATGTTCAACACTGCATTTATTCGATCCAACATATTGATGCTGAACGCTGAAAACTTGGACATTCTGTGGGATTCGAAGGAGCGGTATCCAAAAGGCTTCCGGGCTGAGGTTTTGTTTGGGGATGTTGAAAGCACTAGTCCTCCAAGGGCTCCAACAGCCATGTTAAACGGTGAGGATAAAGGTGGATTGCCAATTGAAGCATTTTCAAAGGTTCAAGAACTTTTTAATGGTGCAGAATGGTTTCAAGGTGGTGATGCTGCTGCTGCTGTCTGGTTGCTTCAACAACTTAGTGTCTTAAATGAGGTCAAAGGGTTTTCGAAGTTGCAAAGCAAACGAAGTTGGTATTCATCACCTGCTGACTCTGAAGATGAAAATAATTCAAGCACTGCCGATAGTTCAGATTACACATTTGATGTTATTTCAAAGACTTTTTCTGTTGATCCTTCAAAATTAACGACATTCGACACCTCTGATTCATCTCATTTAGCTTTTGAGAGTGATAGTGGAAATCATGCAAGTCTCACTTCAAGTGCACCTGATCAGTCACTGACTGATAATGTTCCATCACCTCATCAATCTCCATCATCACCTTCACCAGTTCCTGCTACTCAACCCAAGCTTACATCACCAGCACAAGCACCACCTCTCCCACCACCACCCCCACAATTGTGTAATAAGGAGCCTTCTCTACCATTGTCTAAGAAAGTGCCTCCTCCACCACCTCCTCCACCAATGGCTAAAGGGGCTACTTTAGTTTCATCCCCACCACCTCCACCGCCTCCCCCTCATTCATCTACCACTAACAAGAAAAATGCACCACCGCCGCCTCTACCATCAAGGAGTCATAATATCAGCAAGGCTTCTATGATGCCTCCAGCTCTGGCACCCTCTCCTTTAGGTCGTAACACTAATAATGCTACTATCCCGATTACACCCCAACCCCGTCCGACACCTATGCAACAAGGTTCAGCTCCCCCACCTCCACCTCCACCTCCACCTTCCATAGGTCACAATGCTAGCAACACGTCTATGGCACCTCCGCCTATAAGTCGTAATGCCAACAGCGCTCCTACTCCACCTCCGCCTCCTCCAGGACCTGTAAGTACAGGTTCATCCCCTACAGCTCCACCTCGTCCAGGACCTGTGCACACAAGTTCAGCCCCTCCGCCTCCGCCTCCACCTCCCCCAGGATCCAGGCAAACAGCATCTGTCCCTCCACCTCCACCTCCCCCAGGATCCAGGCAAACAGCGTCTGCCCCTCCACCTCCGCCTCCACCTCCCCCAGGATCTAGGCAAACTGGGTCAGCCCCACCACCTCCACCTCCACCAGGATCTCGACAAACAGGGTCACCCCCACCGCCCCCACCTCCACCAGGATCTCGACAAACGGGGTTAGCCCAACCGCCTCCACCTCCACCAGGATCTCGACAAACGGGGTCAGCCCAACCGCCTCCACCTCCACCTCCACCAGGATCTCGGCAAACAGGGTCAGCCCCACCGCCTCCACCTCCTCCAAGGTCTCGACAAATAGGATCAGCCCCACCGCCTCCACCTCCCCCAGGATCTCGACAAGCAGGGTCAGCCCCACCACCTCCACCTCCCCCAGGGTCTCGACAAACAGGTCCAGCCCCACCAACTCCTCCAGGCCTACGAACGGGTTCAGCTCCACCACCTCCACCACCAGCACCAAGACCTCCAGGTGCTCCTCCTCCTCCACCTGGTCGTGGTGCAATGCCACCACCCCCACCTGCAGGAAGGGCCCCCGGTGTGCCACCACCACCAAGCAAAGCTTCTTTAGCACCAACAAATGTTGGAAGAGGTCGTGGGACCGCTGTTGCTCCAAAGAAAACTCTGTTAAAGCCCCTGCACTGGGTGAAGGTTGCTCGGGCAGTAAAAGGAAGTCTATGGGCTGATTCACCGAAACAAGATAATGAAACGAGGGCCCCAGAAATAGATATATCAGAACTTGAGAGCCTGTTTTCAGCAGCATCTGTTTCTGATGGGAGCAGTATTAAAGGTGGAGGTCGACGTGGTACTAACATCAACAAACCTGAGAAAGTACAACTGGTTGACTTACGTAGAGCAAATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAATGCAGTTCTGGCATTGGATTCTTCTGTTCTGGATATCGACCAGGTCGAGAATCTGATCAAATTCTGTCCCACAAAGGAAGAAATGGAGATGTTGAAGAACTATGCAGGGAAGAAGGAAATGCTTGGGAAGTGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCACGGGTAGAAGCCAAGTTAAGGGTGTTTGCTTTTAAAATCACCTTTTCTTCTCAGGTGAATGATTTAAGGGTAAATTTGAAGACAATCAATGATGCAACCAGAGAGGTGAAAGAATCTGTCAAATTGCGTCAAATAATGCAGACTATTCTTACTCTGGGAAATGCGTTGAATCAGGGAACAGCACGGGGGTCAGCAGTGGGATTCAAATTGGACAGCCTTCTTAAATTATCTGATACTCGTGCAAGAAATAATAAAATGACGTTAATGCACTATCTGTGTAAGCTTCTTGCTGAGAAAATGCCGAAATTGCTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAATTAAAAGCACTGGCCGAAGAAATGCAAGCAGTGAGTAAAGGTTTAGATAAAGTTGAGCAAGAGCTCACTACTTCTGAAAATGATGGTGGTATAGCTACAGGATTTCGTAAGGTACTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCACTTATATCATTGTATGCCGAAGTGGGAAGAAATGCAGACTCTTTGTCCCAGTACTTTGGGGAGGATCCTGCTAGGTGCCCCTTTGAACAAGTGACTCAAATCCTTGTCGTCTTTGTCAAGACATTCAAGAAGTCAAGGGAGGAGAATGAGAGGCTAGCAGATGCTGAAAAAAAGAAATTAGAGAAAGAAGCCATGAAGGAAAAGACAGCAAATAACACTCATTCCAAGAAAGGTGGCATTCCATAG 3960 0.473 MSLLRRFFYKRPPDGLLEFIDRVYVFDSCFCTEALPEEMYQLYLHEIVSELHEEFPESSFLAFNFHEGEKRSHFAEILVEYDVTVMDYPKQYESVPVLPLSLVQHFLRVCESWLSLGHHQNVILFHCERGGWPLLAFLLSSFLIFRRVHSGERKILNMVHREAPKGLLRLLSPFNPFPSQLRYIQYVARRNIVPEWPPPERALSLDCVILRAIPSFDSQNGCRPMVRIFGRNLLSNGGLKTQMIYSMRKNKKTLRHYRQADCDVIKIDIQCFVEGDVVLECVHMDLNPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGDVESTSPPRAPTAMLNGEDKGGLPIEAFSKVQELFNGAEWFQGGDAAAAVWLLQQLSVLNEVKGFSKLQSKRSWYSSPADSEDENNSSTADSSDYTFDVISKTFSVDPSKLTTFDTSDSSHLAFESDSGNHASLTSSAPDQSLTDNVPSPHQSPSSPSPVPATQPKLTSPAQAPPLPPPPPQLCNKEPSLPLSKKVPPPPPPPPMAKGATLVSSPPPPPPPPHSSTTNKKNAPPPPLPSRSHNISKASMMPPALAPSPLGRNTNNATIPITPQPRPTPMQQGSAPPPPPPPPPSIGHNASNTSMAPPPISRNANSAPTPPPPPPGPVSTGSSPTAPPRPGPVHTSSAPPPPPPPPPGSRQTASVPPPPPPPGSRQTASAPPPPPPPPPGSRQTGSAPPPPPPPGSRQTGSPPPPPPPPGSRQTGLAQPPPPPPGSRQTGSAQPPPPPPPPGSRQTGSAPPPPPPPRSRQIGSAPPPPPPPGSRQAGSAPPPPPPPGSRQTGPAPPTPPGLRTGSAPPPPPPAPRPPGAPPPPPGRGAMPPPPPAGRAPGVPPPPSKASLAPTNVGRGRGTAVAPKKTLLKPLHWVKVARAVKGSLWADSPKQDNETRAPEIDISELESLFSAASVSDGSSIKGGGRRGTNINKPEKVQLVDLRRANNCEIMLSKIKIPLPDMLNAVLALDSSVLDIDQVENLIKFCPTKEEMEMLKNYAGKKEMLGKCEQFFMELMKVPRVEAKLRVFAFKITFSSQVNDLRVNLKTINDATREVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPKLLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLDKVEQELTTSENDGGIATGFRKVLKNFLDIAEADVRSLISLYAEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKTFKKSREENERLADAEKKKLEKEAMKEKTANNTHSKKGGIP 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1156 1319 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 187 IPR029021 -
Lal23g1156 1319 Coils Coil 1187 1207 - -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 649 895 - -
Lal23g1156 1319 Pfam Formin Homology 2 Domain 910 1281 IPR015425 -
Lal23g1156 1319 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Lal23g1156 1319 SMART PTEN_C2_2 198 1034 IPR014020 -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 1283 1311 - -
Lal23g1156 1319 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 446 488 - -
Lal23g1156 1319 ProSiteProfiles Formin homology-2 (FH2) domain profile. 906 1306 IPR015425 -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 608 633 - -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 446 911 - -
Lal23g1156 1319 Coils Coil 1281 1310 - -
Lal23g1156 1319 SMART it6_source 530 1315 IPR015425 -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 410 430 - -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 1283 1319 - -
Lal23g1156 1319 Gene3D Formin, FH2 domain 905 1291 IPR042201 -
Lal23g1156 1319 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Lal23g1156 1319 PANTHER FORMIN-J 1 576 - -
Lal23g1156 1319 PANTHER FORMIN-J 626 1312 - -
Lal23g1156 1319 SUPERFAMILY Formin homology 2 domain (FH2 domain) 981 1310 - -
Lal23g1156 1319 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 338 IPR035892 -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 634 648 - -
Lal23g1156 1319 MobiDBLite consensus disorder prediction 489 577 - -
Lal23g1156 1319 Gene3D - 197 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1156 Lal-Chr23 13005387 13015046 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1156 1 439 FH2 protein (formin) Gene Family AT1G31810 72.500 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1156 - - csv:101217517 1465.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0403 16 2432367 2441161 Lal23g1156 23 13005387 13015046 LSH
Lal15g0349 15 2359859 2369270 Lal23g1156 23 13005387 13015046 LSH