Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal23g1143 | ATGGGTCGGAAGAACGACGCCGTTTTGGTCGCCGAAGAAACCCCCAATCCCCAACTCAATTCCGAGAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAAGACAAGCACCAAAATGAAACCTCTAGCCCCAAAAGAAAGCTCCACGATCAAAACGACACCGAATCAATAAAAAAGAACAAGATTAAGCACCACAACTCAAACAACAACGAGGACGACGAAACTGAAGTCGTTAACGGAAACAGTGATGAAACGGTGACGGAACGTGTGGTGGTGGTTACCGGTAAGAATGCCGATGATTCCAAATACGCGGCGGTTAAAACCTTCGCCGATTCAGGGCTTCCAGAGAAGGTACTGGAATGCTGCAAGGGATTCGAGAAGCCTTCTCCGATTCAATCGCGAGCGTGGCCTTTCTTATTGGACGGTCGTGATCTCATTGGAATTGCTGCAACCGGTTCAGGGAAGACATTGGCTTTTGGAATACCGGCGATTATGCATATTATGAAGAAAGGGAAGAATAAAGCGGCCCGGGGTCGAAATCCTCTTTGTCTGATGCTCTCCCCCACTAGGGAGCTAGCTCAACAAATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGTTGTCGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCCCAGATCTCATCACTGAAATCTGGCGTTGACATTGTCATTGGAACCCCTGGTCGTATACAAGATCTGATTGAAATGGGTGTCTTATCCCTAAAAGAAGCATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAGTAGTTCGCTCCATCCTGAGTCAGACATCTTCTGTTCGTCAGATGGTAATGTTCAGTGCTACATGGCCTTTAGAAGTTCATCACTTAGCACAGGAGTTCATGGATCCTAACCCTGTAAAGGTTGTTGTAGGCTCAGAAGATCTAGCTGCCAATCACGATGTCATGCAGATAGTTGAGGTGTTGGATGAGCGTGCACGTGATAAGCGACTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTTTTGGTTTTTGTTCTGTACAAATTGGAGGCCTCACGAGTTGAAAATATGCTTCAAAAAGGGGGTTGGAAGGCTGTATCAATACATGGGGACAAAGCACAACATGCTCGTACAAAGGCACTATCCTTATTCAAGGAGGGGACATGTCCTTTGATGGTTGCTACTGATGTAGCTGCTCGGGGTTTGGATATTCCAGATGTTGAAGTGGTGATCAACTATAGTTTTCCCCTAACAACAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGAAAGAAAGGTGTTGCACATACATTCTTCACCCAGCAGAATAAGGGATTGGCTGGAGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTGCCAGAGGCCCTTATGAAATTTGGCACACATGTAAAGAAAAAGGAGTCGAAGCTTTATGGGGCTCACTTCAAGGAAATTGCTGCTGATGCTCCAAAGTCAAAGAAAATCACATTTAACTCTGACGATGAAGACTAA | 1575 | 0.4514 | MGRKNDAVLVAEETPNPQLNSEKKKKKKKNKNKDKHQNETSSPKRKLHDQNDTESIKKNKIKHHNSNNNEDDETEVVNGNSDETVTERVVVVTGKNADDSKYAAVKTFADSGLPEKVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHIMKKGKNKAARGRNPLCLMLSPTRELAQQISDVMCDAGRSCVVESVCLYGGTSKGPQISSLKSGVDIVIGTPGRIQDLIEMGVLSLKEASFVVLDEADRMLDMGFEQVVRSILSQTSSVRQMVMFSATWPLEVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDERARDKRLVALLEKYHKSQRNRVLVFVLYKLEASRVENMLQKGGWKAVSIHGDKAQHARTKALSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPEALMKFGTHVKKKESKLYGAHFKEIAADAPKSKKITFNSDDED | 524 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal23g1143 | 524 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 325 | 488 | IPR001650 | - | |
Lal23g1143 | 524 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 135 | 312 | IPR014001 | - | |
Lal23g1143 | 524 | MobiDBLite | consensus disorder prediction | 34 | 71 | - | - | |
Lal23g1143 | 524 | Gene3D | - | 56 | 315 | IPR027417 | - | |
Lal23g1143 | 524 | PANTHER | BNAA08G07020D PROTEIN | 23 | 510 | - | - | |
Lal23g1143 | 524 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 106 | 132 | IPR014014 | GO:0003724 | |
Lal23g1143 | 524 | CDD | SF2_C_DEAD | 326 | 458 | - | - | |
Lal23g1143 | 524 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 258 | 266 | IPR000629 | - | |
Lal23g1143 | 524 | Gene3D | - | 316 | 491 | IPR027417 | - | |
Lal23g1143 | 524 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 23 | 510 | - | - | |
Lal23g1143 | 524 | Coils | Coil | 19 | 39 | - | - | |
Lal23g1143 | 524 | CDD | DEADc | 122 | 313 | - | - | |
Lal23g1143 | 524 | Pfam | Helicase conserved C-terminal domain | 340 | 449 | IPR001650 | - | |
Lal23g1143 | 524 | SMART | helicmild6 | 368 | 449 | IPR001650 | - | |
Lal23g1143 | 524 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Lal23g1143 | 524 | Pfam | DEAD/DEAH box helicase | 129 | 298 | IPR011545 | GO:0003676|GO:0005524 | |
Lal23g1143 | 524 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 179 | 462 | IPR027417 | - | |
Lal23g1143 | 524 | SMART | ultradead3 | 123 | 329 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal23g1143 | Lal-Chr23 | 12907916 | 12913180 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal23g1143 | 105 | 457 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.803 | 1.56e-55 | 190 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal23g1143 | K14811 | - | gmx:100305353 | 821.231 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal15g0370 | 15 | 2498596 | 2504626 | Lal23g1143 | 23 | 12907916 | 12913180 | LSH |