Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1143 ATGGGTCGGAAGAACGACGCCGTTTTGGTCGCCGAAGAAACCCCCAATCCCCAACTCAATTCCGAGAAGAAGAAGAAGAAAAAGAAGAACAAAAACAAAGACAAGCACCAAAATGAAACCTCTAGCCCCAAAAGAAAGCTCCACGATCAAAACGACACCGAATCAATAAAAAAGAACAAGATTAAGCACCACAACTCAAACAACAACGAGGACGACGAAACTGAAGTCGTTAACGGAAACAGTGATGAAACGGTGACGGAACGTGTGGTGGTGGTTACCGGTAAGAATGCCGATGATTCCAAATACGCGGCGGTTAAAACCTTCGCCGATTCAGGGCTTCCAGAGAAGGTACTGGAATGCTGCAAGGGATTCGAGAAGCCTTCTCCGATTCAATCGCGAGCGTGGCCTTTCTTATTGGACGGTCGTGATCTCATTGGAATTGCTGCAACCGGTTCAGGGAAGACATTGGCTTTTGGAATACCGGCGATTATGCATATTATGAAGAAAGGGAAGAATAAAGCGGCCCGGGGTCGAAATCCTCTTTGTCTGATGCTCTCCCCCACTAGGGAGCTAGCTCAACAAATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGTTGTCGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGGCCCCAGATCTCATCACTGAAATCTGGCGTTGACATTGTCATTGGAACCCCTGGTCGTATACAAGATCTGATTGAAATGGGTGTCTTATCCCTAAAAGAAGCATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAGCAAGTAGTTCGCTCCATCCTGAGTCAGACATCTTCTGTTCGTCAGATGGTAATGTTCAGTGCTACATGGCCTTTAGAAGTTCATCACTTAGCACAGGAGTTCATGGATCCTAACCCTGTAAAGGTTGTTGTAGGCTCAGAAGATCTAGCTGCCAATCACGATGTCATGCAGATAGTTGAGGTGTTGGATGAGCGTGCACGTGATAAGCGACTGGTTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGTTTTGGTTTTTGTTCTGTACAAATTGGAGGCCTCACGAGTTGAAAATATGCTTCAAAAAGGGGGTTGGAAGGCTGTATCAATACATGGGGACAAAGCACAACATGCTCGTACAAAGGCACTATCCTTATTCAAGGAGGGGACATGTCCTTTGATGGTTGCTACTGATGTAGCTGCTCGGGGTTTGGATATTCCAGATGTTGAAGTGGTGATCAACTATAGTTTTCCCCTAACAACAGAAGATTATGTTCATAGAATTGGGCGAACTGGACGAGCTGGAAAGAAAGGTGTTGCACATACATTCTTCACCCAGCAGAATAAGGGATTGGCTGGAGAGCTGGTGAATGTTTTAAGAGAAGCAGGGCAAATTGTGCCAGAGGCCCTTATGAAATTTGGCACACATGTAAAGAAAAAGGAGTCGAAGCTTTATGGGGCTCACTTCAAGGAAATTGCTGCTGATGCTCCAAAGTCAAAGAAAATCACATTTAACTCTGACGATGAAGACTAA 1575 0.4514 MGRKNDAVLVAEETPNPQLNSEKKKKKKKNKNKDKHQNETSSPKRKLHDQNDTESIKKNKIKHHNSNNNEDDETEVVNGNSDETVTERVVVVTGKNADDSKYAAVKTFADSGLPEKVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAIMHIMKKGKNKAARGRNPLCLMLSPTRELAQQISDVMCDAGRSCVVESVCLYGGTSKGPQISSLKSGVDIVIGTPGRIQDLIEMGVLSLKEASFVVLDEADRMLDMGFEQVVRSILSQTSSVRQMVMFSATWPLEVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDERARDKRLVALLEKYHKSQRNRVLVFVLYKLEASRVENMLQKGGWKAVSIHGDKAQHARTKALSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAGQIVPEALMKFGTHVKKKESKLYGAHFKEIAADAPKSKKITFNSDDED 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1143 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 488 IPR001650 -
Lal23g1143 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 312 IPR014001 -
Lal23g1143 524 MobiDBLite consensus disorder prediction 34 71 - -
Lal23g1143 524 Gene3D - 56 315 IPR027417 -
Lal23g1143 524 PANTHER BNAA08G07020D PROTEIN 23 510 - -
Lal23g1143 524 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 106 132 IPR014014 GO:0003724
Lal23g1143 524 CDD SF2_C_DEAD 326 458 - -
Lal23g1143 524 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 258 266 IPR000629 -
Lal23g1143 524 Gene3D - 316 491 IPR027417 -
Lal23g1143 524 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 510 - -
Lal23g1143 524 Coils Coil 19 39 - -
Lal23g1143 524 CDD DEADc 122 313 - -
Lal23g1143 524 Pfam Helicase conserved C-terminal domain 340 449 IPR001650 -
Lal23g1143 524 SMART helicmild6 368 449 IPR001650 -
Lal23g1143 524 MobiDBLite consensus disorder prediction 1 85 - -
Lal23g1143 524 Pfam DEAD/DEAH box helicase 129 298 IPR011545 GO:0003676|GO:0005524
Lal23g1143 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 462 IPR027417 -
Lal23g1143 524 SMART ultradead3 123 329 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1143 Lal-Chr23 12907916 12913180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1143 105 457 Eukaryotic Initiation Factors Gene Family AT3G19760 33.803 1.56e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1143 K14811 - gmx:100305353 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0370 15 2498596 2504626 Lal23g1143 23 12907916 12913180 LSH