Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1124 ATGAGCTTTCAGGACATCGAGTCTGGGAGGCCTTTCGCTTCACGGCGGAGCCTAATCAACGGTAAACAGGATCCTACGCAGGCGGTGGCTTCTGGAATATTCCAGATTAACACAGCCGTCTCCACCTTTCAGAGGCTCGTCAATACCCTCGGTACCCCTAAGGACACCCCCGAACTCCGCGAGAAGCTGCATAAGACGAGATTGCATATTGGACAATTGGTGAAGGATACTTCCGCTAAACTTAAGGAAGCTAGTGAAATTGATCACCATTCTAATGTTAATGCCAACAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTTCTGCTGAGAGGGAAACGGCTTACACTCCTTTTGTTCCACAAACAGCTCTGTCGCACAGCGAAGTAGATGTTAGATCTGATAAGCCTCCCGAGCAGCGTGCCCTTCTCATGGAATCCAAAAGGCAGGAGGTATTATTCTTAGATAATGAGATTGCATTCAATGAGGCTATCATTGAAGAAAGAGAGCAAGGAATTCAAGAAATTCATCAGCAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCACGAGCAAGGAACAATGATCGACGATATTGGGTCCAATATCGATAATTCCCATGCAGCAACCGCACAAGCAAAATCTCAACTTGCAAAAGCTTCAAAGACACAAAAATCAAATTCGTCTCTGACATGCTTGCTTTTAGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTGCTTGCTGCTTAG 810 0.4432 MSFQDIESGRPFASRRSLINGKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKEASEIDHHSNVNANKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQTALSHSEVDVRSDKPPEQRALLMESKRQEVLFLDNEIAFNEAIIEEREQGIQEIHQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIDNSHAATAQAKSQLAKASKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1124 269 ProSitePatterns Syntaxin / epimorphin family signature. 182 221 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal23g1124 269 CDD SNARE_Qa 179 237 - -
Lal23g1124 269 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 238 IPR000727 -
Lal23g1124 269 Gene3D - 170 269 - -
Lal23g1124 269 CDD SynN 23 137 IPR006011 GO:0016020
Lal23g1124 269 Pfam SNARE domain 212 264 IPR000727 -
Lal23g1124 269 SUPERFAMILY t-snare proteins 23 231 IPR010989 GO:0016020|GO:0016192
Lal23g1124 269 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 268 - -
Lal23g1124 269 PANTHER SYNTAXIN 2 268 IPR045242 -
Lal23g1124 269 SMART tSNARE_6 171 238 IPR000727 -
Lal23g1124 269 SMART SynN_4 14 127 IPR006011 GO:0016020
Lal23g1124 269 Gene3D - 20 133 - -
Lal23g1124 269 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1124 Lal-Chr23 12784264 12788527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1124 1 257 SNARE and Associated Proteins AT5G46860 80.545 5.81e-150 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1124 - K08488 gmx:547656 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1124 23 12784264 12788527 Lal23g1124 23 12784264 12788527 ECH
Lal15g0393 15 2678178 2681671 Lal23g1124 23 12784264 12788527 LSH