Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1123 ATGACATTGGTCATCAGAGAGAGGAGGCACCAACAAGCTCTAAGGCTTTCATTGCCACCACCTTCAACTCCATCATCTGATCACTTATGTCACCAAATCCATGTACCAACATCGTTGCCATCACCATCCTCTCATGAAAACTCTTCTCCTGGCATCAGGAACCTTTCTGATCTCAAGAAAGTTGCAGTTCTTGGCCATGGCAACGGTGGCACAGTATATAAAGTTCACCACAAGAAGAACCATTCCTTCTATGCATTGAAAGTCCTAAGATTCAATGACAATGGCATTGGCATACACGAACCTTCTATAGTACTTGAGGCCGAGATTCTTAAACGCGTGGATTCTCCATTCATAGTAAAGTGTCATGCAGTTTTTGGCAATGATAATTGCACCGAAGCTGACAATGGAGACGACCTTAGCTTTGTTATGGAGTACATGGAAGGAGGGTCACTGCATGATGTGTTGAGAGAAAAATATAGACTTCCAGAGGAGGTGATTTCTTTGTTGGCTAAGAGGGTATTGGAAGGGTTAAACTATCTGCATGGCATGCACATTGTGCATAGAGATATAAAACCTTCAAACTTACTTGTAAATGATAAAGGAGAGTTAAAGATTGCAGATTTTGGAGTTAGTCATATAGTGGAAGGAAGATTTGATGCAAGTGAGTTAAATGCAGGAACATGTGCATACATGAGTCCAGAAAGAGTTGATCCTGAAAGATGGGGTGGTGAAAATGTGGATGAGTTTGCAGGGGATGTGTGGTCAATGGGAGTAGTAATGTTGGAATGTTTTTTGGGTTATTTTCCATTGATTGGTCCAGGTCAAAGACCAGATTGGGCAACATTGATGTGTGCAATTTGCTTTGGAGAGAAGCTAGAGATGCCAGAGAAGGCATCACCTGAGTTTCAAAATTTTGTTAGGAGGTGTGTAGAGAAGGATTGGAGGAAGAGAGCAACAGTGAAAGAGCTTCTTCAACACCCTTTTCTGAATAGAAAGTGTTTCTGCATTACCAAGGGGCTCGGTGACTATGTCATTCATGAATGA 1044 0.4186 MTLVIRERRHQQALRLSLPPPSTPSSDHLCHQIHVPTSLPSPSSHENSSPGIRNLSDLKKVAVLGHGNGGTVYKVHHKKNHSFYALKVLRFNDNGIGIHEPSIVLEAEILKRVDSPFIVKCHAVFGNDNCTEADNGDDLSFVMEYMEGGSLHDVLREKYRLPEEVISLLAKRVLEGLNYLHGMHIVHRDIKPSNLLVNDKGELKIADFGVSHIVEGRFDASELNAGTCAYMSPERVDPERWGGENVDEFAGDVWSMGVVMLECFLGYFPLIGPGQRPDWATLMCAICFGEKLEMPEKASPEFQNFVRRCVEKDWRKRATVKELLQHPFLNRKCFCITKGLGDYVIHE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1123 347 Gene3D Phosphorylase Kinase; domain 1 41 143 - -
Lal23g1123 347 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 10-LIKE 5 332 - -
Lal23g1123 347 Pfam Protein kinase domain 60 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1123 347 ProSiteProfiles Protein kinase domain profile. 58 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1123 347 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 5 332 IPR045269 GO:0004674|GO:0006914
Lal23g1123 347 SUPERFAMILY Protein kinase-like (PK-like) 34 332 IPR011009 -
Lal23g1123 347 Gene3D Transferase(Phosphotransferase) domain 1 144 336 - -
Lal23g1123 347 SMART serkin_6 58 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1123 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Lal23g1123 347 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Lal23g1123 347 CDD PKc_MAPKK_plant_like 56 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1123 Lal-Chr23 12782141 12783184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1123 1 332 MAP Kinase Kinase Gene Family AT1G32320 53.313 2.11e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lal23g1123 Pkinase 1.7e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1123 K20604 - gmx:100817973 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0395 15 2685612 2686601 Lal23g1123 23 12782141 12783184 LSH