Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1122 ATGGATCATACCCGAGACAGCAACGTCGTTCAAATAAACACCGGCGGTGAAAACGTGTCACCGTCCGGCTCCGGCGACCAATCTGTATGGGCAACTGAAGACGATTACAGATTCTTCAACAACGATGTTGAATCCACACCAAAGAGATCAAGAAACTCGCAGGACGCAACGGCGTCGTCTAGCAATAACCGTTCAAAAGCGATTGGGAAAATGTTCTTCAAGACGAAGCTATGTTGCAAGTTCCGCGCCGGCACGTGTCCCTACGTCACGAACTGTAACTTCGCGCATAGCATTGAGGAGCTGCGGCGGCCACCACCGAACTGGCAGGAGATAGTGGCGGCGCATGAGGATGATAGATCGGTGCCGCCGAGGGAGGAGTTTCAGATTCCGTCTCTTTCGGGGCATTCAGGGGATACACAGAGGTCTTATAAGGGGAGACATTGCAAGAAGTTTTATACTGAGGAAGGGTGTCCCTATGGAGATAGTTGCACTTTTTTGCATGATGAGAATTCGAGGAACAGAGAGAGTGTGGCTATAAGTTTAGGACCTGGTGGGTATGGTGGTGGTGGTGGTGGTGGTGGTGGCAGTGGTGGTGGTGGTGGTACTGGGAGTGGTAGTGTTACTGCTGCTGGGGGTGGTGGTAGTTCTAATTTAAAGCCTTCAAATTGGAAGACAAGGATTTGCAATAAGTGGGAGTTGACAGGGTATTGTCCATTTGGGAACAAATGTCATTTTGCTCATGGTGCTGCAGAATTGAGCCAACATGGTGGGTTTGTGGAGGGAGAAAGTAGAGACACAGCTTCTGCCGGTACTCCTGCTGATAATGTGGCCGCATCAGTTATTCCAGTTGCCCATTCTGATGTCTATCATATCGGGGTTCCTTCACAAAGGCCTTCCATTGCTATTCAGAGGCCAGGACAGAGAGCTCATAAGAAGTGGAAAGGTCCTGATAAAATAAGTAGGATATATGGTGATTGGATTGATGATATCGAATAG 996 0.49 MDHTRDSNVVQINTGGENVSPSGSGDQSVWATEDDYRFFNNDVESTPKRSRNSQDATASSSNNRSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIVAAHEDDRSVPPREEFQIPSLSGHSGDTQRSYKGRHCKKFYTEEGCPYGDSCTFLHDENSRNRESVAISLGPGGYGGGGGGGGGSGGGGGTGSGSVTAAGGGGSSNLKPSNWKTRICNKWELTGYCPFGNKCHFAHGAAELSQHGGFVEGESRDTASAGTPADNVAASVIPVAHSDVYHIGVPSQRPSIAIQRPGQRAHKKWKGPDKISRIYGDWIDDIE 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1122 331 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Lal23g1122 331 Gene3D - 133 182 - -
Lal23g1122 331 MobiDBLite consensus disorder prediction 116 142 - -
Lal23g1122 331 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Lal23g1122 331 SUPERFAMILY CCCH zinc finger 70 103 IPR036855 GO:0046872
Lal23g1122 331 MobiDBLite consensus disorder prediction 45 64 - -
Lal23g1122 331 SUPERFAMILY CCCH zinc finger 141 170 IPR036855 GO:0046872
Lal23g1122 331 MobiDBLite consensus disorder prediction 177 219 - -
Lal23g1122 331 Pfam CCCH-type zinc finger 146 168 IPR041367 -
Lal23g1122 331 PANTHER CCCH ZINC FINGER/TIS11-RELATED 44 184 IPR045877 GO:0003729
Lal23g1122 331 PANTHER CCCH ZINC FINGER/TIS11-RELATED 20 50 IPR045877 GO:0003729
Lal23g1122 331 PANTHER CCCH ZINC FINGER/TIS11-RELATED 215 328 IPR045877 GO:0003729
Lal23g1122 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 215 328 - -
Lal23g1122 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 44 184 - -
Lal23g1122 331 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 20 50 - -
Lal23g1122 331 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Lal23g1122 331 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Lal23g1122 331 SMART c3hfinal6 142 169 IPR000571 GO:0046872
Lal23g1122 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 97 IPR000571 GO:0046872
Lal23g1122 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 248 IPR000571 GO:0046872
Lal23g1122 331 SUPERFAMILY CCCH zinc finger 219 253 IPR036855 GO:0046872
Lal23g1122 331 MobiDBLite consensus disorder prediction 1 64 - -
Lal23g1122 331 ProSiteProfiles Zinc finger C3H1-type profile. 142 170 IPR000571 GO:0046872
Lal23g1122 331 MobiDBLite consensus disorder prediction 7 29 - -
Lal23g1122 331 Gene3D - 214 255 - -
Lal23g1122 331 Gene3D - 67 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1122 Lal-Chr23 12777793 12779952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1122 224 252 C3H Transcription Factor Family AT1G68200 62.069 3.11e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal23g1122 zf-CCCH 1e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1122 - - lang:109349089 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1122 23 12777793 12779952 Lal23g1122 23 12777793 12779952 ECH