Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1117 ATGGCCTCTTCTGACCCCTTCACCGACAAGAACACCGTGTTCCGTAAGCTCAAGGCAAAATCTGATAATAAGATGTGTTTTGATTGCAACGCAAAGAACCCAACTTGGGCTTCTGTGACCTATGGTATCTTCCTATGCATTGATTGTTCCGCTGCTCATCGCAGTCTCGGTGTCCACATTAGTTTTGTTAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAAACGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAGCACGGTTGGACTGATGGTGGTAAAATAGAGGCCAAATATACATCAAGAGCTGCTGAATTATATAAACAAATACTTTCTAAGGAAGTATCTAAAAGTATGGCTGAGGAAGCAGGTTTAGCATCATCTGTTGTTGCTGTCCAGTCTCCACAAGTGGCTAATGGACTTCCTGAAGTTAGGACCAATGAGTTACCAAAAGAAAATAGTCTGGGGAAGCCTGAAACGCCTGAGAGCACTTCTTCACCTAGAGCTTCACATACAACATTTTCCAGTACTGTAAAAAAATCTATTGGTGCCAAAAAAACTGGGAAGACTGGGGGACTTGGTGCCCGGAAGCTTACAAAAAAGCCAAGTGAGTCTCTCTATGAACAGAAGCCAGAAGAACCACCTGCTCCAGTTTCTTCCCCAGCAAACAACAATTTGCCTACTGGACCATCACCACCATCTCGGTTTGGGTATGTAGAAAATGTCCAGTCATCTGATTCGAATTCGGGAGGGGGGGATACAAAAATGCCTGGTCATGTGTCTGTGCCGAAGTCATCGAGCTTCTTTGCAGACTTTGGAATGGATAGTGGTTTTCCAAAGAAGACTCTGTCAAATTCCTCAAAAGTGCAAATTCAGGAATCTGATGAAGCAAGAAAGAAGTTCTCAAATGCTAAATCTATTTCTTCATCCCAATTTTTTGGAGATCAGAATAAAGCTGAAGACTTGGCTGCTCAGGCTACTTTGTCCAAGTTTTCCGGTAAAACTGCCATCTCCAGTGCTGATCTTTTCGGCGACTCAGACTCTTCCATTGACCTTGCTGCTAGTGACCTCATCAATCGGATATCATTCCAGGCACAAGAAGATATCTCTTCCCTCAGAAACATTGCTGGAGAGACTGGGAAGAGACTCAGCTCCTTGGCTTCCACTTTGATAACAGATCTTCAAGATAGAATACTCTAA 1221 0.4324 MASSDPFTDKNTVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHISFVRSTNLDSWSPEQLKTMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYKQILSKEVSKSMAEEAGLASSVVAVQSPQVANGLPEVRTNELPKENSLGKPETPESTSSPRASHTTFSSTVKKSIGAKKTGKTGGLGARKLTKKPSESLYEQKPEEPPAPVSSPANNNLPTGPSPPSRFGYVENVQSSDSNSGGGDTKMPGHVSVPKSSSFFADFGMDSGFPKKTLSNSSKVQIQESDEARKKFSNAKSISSSQFFGDQNKAEDLAAQATLSKFSGKTAISSADLFGDSDSSIDLAASDLINRISFQAQEDISSLRNIAGETGKRLSSLASTLITDLQDRIL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1117 406 MobiDBLite consensus disorder prediction 229 261 - -
Lal23g1117 406 SUPERFAMILY ArfGap/RecO-like zinc finger 12 126 IPR037278 -
Lal23g1117 406 MobiDBLite consensus disorder prediction 164 190 - -
Lal23g1117 406 Pfam Putative GTPase activating protein for Arf 12 111 IPR001164 GO:0005096
Lal23g1117 406 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 406 - -
Lal23g1117 406 MobiDBLite consensus disorder prediction 147 265 - -
Lal23g1117 406 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lal23g1117 406 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lal23g1117 406 PRINTS HIV Rev interacting protein signature 63 84 IPR001164 GO:0005096
Lal23g1117 406 CDD ArfGap_ArfGap2_3_like 9 124 - -
Lal23g1117 406 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 406 - -
Lal23g1117 406 Gene3D Arf GTPase activating protein 2 140 IPR038508 -
Lal23g1117 406 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Lal23g1117 406 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1117 Lal-Chr23 12731789 12737488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1117 14 92 C2H2 Transcription Factor Family AT4G21160 46.250 1.19e-19 87.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1117 23 12731789 12737488 Lal23g1117 23 12731789 12737488 ECH
Lal16g0467 16 2895253 2899745 Lal23g1117 23 12731789 12737488 LSH
Lal15g0411 15 2782786 2787418 Lal23g1117 23 12731789 12737488 LSH
Lal23g1117 23 12731789 12737488 Lal16g1746 16 16474320 16484497 PCT
Lal16g1746 16 16474320 16484497 Lal23g1117 23 12731789 12737488 PCT