Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1116 ATGAATCTCTGGACCGACGACAATTCCTCCGTCATGGAGGCTTTTATGTCCACTACTTCTTCCTCCGATCTCTCTTCTCTCTGGCCACCTCCTACGCCGTCACTTCCACCACAACAACAACCACCACCACCACCACCACCACCACACCAACAACAACCCCTTTTTAACCAGGATACCCTTCAGCAACGTCTCCAAGCTCTCATCGAGGGCCACGTCACTCACATATGGACCTATGCCATATTCTGGCAATCCTCTTATGATTATTCATCTTCATCCACTCTCCTCGCTTGGGGCGATGGTTACTATAAAGGCGACGATGACAAATCCAAATCAAAATCAAAACCCAACAACAATAACACTAAGAAGACTTCGTCTGAAGAACAAAACCACCGGAAGAAAGTACTTCGAGAACTTAACTCTCTCATCTCAGGCTCTACAACTGAAAACGATACAGTAGATGAAGAAGTCACAGACACAGAGTGGTTCTTCCTTGTTTCCATGACTCAGTCATTTGTCAATGGTTCTGAGTTACCTGCTCAGGCTTTCTTTAACTCGAACCCGGTTTGGGTCACCGGTTCGGACCGGCTTGCTGGATCGGCTTCTGAGAGGGCTAGACAGGCGCAGGTTTTTGGGCTTCAAACTATTGTTTGCATACCGGCGGCGAATGGGGTTGTGGAACTGGGGTCCACTGAAATGGTTTTCCAAAACCCTGATCTAATGAACAAGGTGAGATTTTTATTCAATTTCAACAATAACAGTAACAATCATGATATGGGTTCATGGCCCTTCACCGCTAGCACAATCACGGATCAGGGTGAGAACGACCCTTCTTCGTTATGGCTCAATGATCCTGAAATTAGGGATTCCGTGAATACAAAAAACACTGTTGTTGCTCCTGTTAATGGTGATGTTTCTGCTTCTATTCCGAGCTTGCACAATAGTCATAGAAACAATCATAACAATCAGGTTATTCCTAAAACGACACAGCTTGAAACCCCTGGTTCTAGTACTTTAACGGAAACCCCAAGTGCTATTAACTTCCCTAGTAGGACTCCTCACCAGAAGCAGAATCAGCAGCAACAGCAGACCTTATTTTCTCGGGAATTGAACTTTTCTGCTTATGGGTTTGAAGGAAATGGTGTGAAGAATGGGGGCAATAAGCATAACCACCATTCTCTGAAGCCAGAATCAGGCGAGATTCTGAGCTTCGGGGAGAGCAAGAAGAGTTCTTACACCAACACAAATGGAAATATGTCTCATTTTTTCTCTGGTCAGTCTCAATTTGTTGCTGCTGCTCCTGCTGCGGAGGAGAATAGCAAGAAGAGGAGATCCCAGACTTCGAGGAGCGGCAATGATGATGACATGCTTTCCTTCACCTCTGGTGTTGTTTTGCCGGCTTCAACTTCGAATATGAGGTCTAGTGGTGGTGGTGATTCAGATCATTCGGATCTTGAAGCTTCTGTGGTGAAGGACCCTGAAAGCACTAGAGTGGTCGAACCGGAAAAACGTCCCCGAAAAAGAGGGAGGAAACCAGCAAATGGCAGAGAGGAACCATTGAATCATGTTGAAGCAGAGAGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTATGCGCTTCGTGCGGTGGTTCCAAACGTGTCAAAGATGGATAAAGCATCCCTCTTGGGGGATGCCATTTCTTACATTACAGAGCTGAAATCCAAGCTTCAGAACCTTGAATCAGACAAAGATGGTTTGGCGAAGCAATTGGATTCAGTGAAGAAGGAACTTGAGAAAACCACCAAAGATTCAGATGCACCACCTCCACTTGACAAGGAATTGAAGATGTCGAATAGTGTCGGAAGCGCTAAGCTGATTGATTTGGATATCGATGTTAAGATTATTGGTTGGGATGCAATGGTAAGGATCCAATGTAGCAAGAAGAATCACCCGGCTGCAAGGTTGATGGCGGCTTTGATGGAATTGGACTTGGATGTGCACCATGCCAGTGTGTCAGTGGTGAATGATTTGATGATCCAACAAGCTACGGTGAAAATGGGAAGCAGGTTTTATACACAGGAGCAGCTACGCGTTGCACTGTCGTCTAAAAGCAAAGGCATAGATGGAATGTTCATTGCTTTGCAGTACCAGGCTACCAGCATAGTGCGTTGTGACAAATATGAAAGCGTTCAAAAGGAACCCATTCATTCATCCGCTTTTGCGCATGATGCATCGTACAAGACACTCAAAGAGTCAAAGATGGAGAATCTGGAGAAAGCAATGGCATATCGGATGAAGATCTCTTGTGTCAGTTTATGTCCTCATCTGTGTAACGCACCAATTAAATCAGGAAGAGACAAAGTTTGTTTGGACAGAGGATCTATGTACATCGGATAA 2376 0.4533 MNLWTDDNSSVMEAFMSTTSSSDLSSLWPPPTPSLPPQQQPPPPPPPPHQQQPLFNQDTLQQRLQALIEGHVTHIWTYAIFWQSSYDYSSSSTLLAWGDGYYKGDDDKSKSKSKPNNNNTKKTSSEEQNHRKKVLRELNSLISGSTTENDTVDEEVTDTEWFFLVSMTQSFVNGSELPAQAFFNSNPVWVTGSDRLAGSASERARQAQVFGLQTIVCIPAANGVVELGSTEMVFQNPDLMNKVRFLFNFNNNSNNHDMGSWPFTASTITDQGENDPSSLWLNDPEIRDSVNTKNTVVAPVNGDVSASIPSLHNSHRNNHNNQVIPKTTQLETPGSSTLTETPSAINFPSRTPHQKQNQQQQQTLFSRELNFSAYGFEGNGVKNGGNKHNHHSLKPESGEILSFGESKKSSYTNTNGNMSHFFSGQSQFVAAAPAAEENSKKRRSQTSRSGNDDDMLSFTSGVVLPASTSNMRSSGGGDSDHSDLEASVVKDPESTRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKSKLQNLESDKDGLAKQLDSVKKELEKTTKDSDAPPPLDKELKMSNSVGSAKLIDLDIDVKIIGWDAMVRIQCSKKNHPAARLMAALMELDLDVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRVALSSKSKGIDGMFIALQYQATSIVRCDKYESVQKEPIHSSAFAHDASYKTLKESKMENLEKAMAYRMKISCVSLCPHLCNAPIKSGRDKVCLDRGSMYIG 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1116 791 PANTHER TRANSCRIPTION FACTOR MYC2 5 697 - -
Lal23g1116 791 PANTHER MYC 5 697 IPR045084 GO:0003700|GO:0006355
Lal23g1116 791 Gene3D - 508 597 IPR036638 GO:0046983
Lal23g1116 791 Coils Coil 562 596 - -
Lal23g1116 791 MobiDBLite consensus disorder prediction 483 522 - -
Lal23g1116 791 MobiDBLite consensus disorder prediction 430 522 - -
Lal23g1116 791 MobiDBLite consensus disorder prediction 16 54 - -
Lal23g1116 791 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 519 584 IPR036638 GO:0046983
Lal23g1116 791 MobiDBLite consensus disorder prediction 309 362 - -
Lal23g1116 791 SMART finulus 522 571 IPR011598 GO:0046983
Lal23g1116 791 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 516 565 IPR011598 GO:0046983
Lal23g1116 791 MobiDBLite consensus disorder prediction 29 52 - -
Lal23g1116 791 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 247 IPR025610 -
Lal23g1116 791 MobiDBLite consensus disorder prediction 450 477 - -
Lal23g1116 791 CDD bHLH_AtAIB_like 513 589 - -
Lal23g1116 791 MobiDBLite consensus disorder prediction 376 400 - -
Lal23g1116 791 Pfam Helix-loop-helix DNA-binding domain 520 565 IPR011598 GO:0046983
Lal23g1116 791 MobiDBLite consensus disorder prediction 105 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1116 Lal-Chr23 12718548 12722637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1116 1 696 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 52.286 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g1116 bHLH-MYC_N 1.3e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1116 K13422 - gmx:100776289 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1116 23 12718548 12722637 Lal23g1116 23 12718548 12722637 ECH
Lal16g0469 16 2918156 2921546 Lal23g1116 23 12718548 12722637 LSH