Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1104 ATGAGGACAACTAATTTGTATCCATTTATTTCATTTAGCATGGAAGAATACTTTTTGTTATTAAAAAATAAAACTAGAGTGAAGAGGAAGACAGAGGAAAATAGAACAAACATGGAGCTTTCACAACTTGGTTTTCTAGAGGAACTACTAGCTCCAAGAAGAGATACATGGAATGGTTTATCCACTGGGATGAGTAGTGAACTATTCCCTAGTAGTTGGAGCATTGACTCTTTTGATGAGAGTCCTTATTTATCTACTTTCACTCCCTCATCTGCTGCATTCTCAACATCATTAGACCATAGATTTGAATGCCCTTATGGAAATGATGCAGCATATCCATTTGTTGATCGGTTCACAATGCCAGAGCTTGGTTCATCACACACCACGAATCATGACCTGGAACCACTTTTACCACAAGAGGATAACCCATCATCAATGCATGATGAAGAACTTGGCTTTCTTGGAAATGGTAACCTGGGTTTGGAAGAAATAAATGATGGCTGCAAAGTTGAGGAACAAGCTTCAGAGATTCCAGTTTTCAACATGGGCATTTGTGGAGAGAGAAAAACAAAATACAAGAAAGTAGAAGGGCAACCCTCAAAGAATCTCATGGCAGAAAGGAGGAGAAGAAAACGTCTCAATGATAGGCTTTCAATGCTAAGGTCAATAGTACCTAAGATCAGCAAGATGGACAGGACTTCCATTCTTGGAGATGCCATTGATTACATTAAAGAGCTTCTAGAAAGGATAGGAAAGTTGCAAGAAGAAGAAATGGATGAGGAGAAAAATCAGATAAACCACTTGGACATTTCTAAGGAGCAAAAACCAAATGAAGGAATGGTAAGAAATGCTCCCAAGTTTGATGTTGAGAGAAGAGACAAGGACACCAAAATAAGCATATGCTGTGCCACAAAGCCTGGATTATTACTGTCAACAGTGAACACCTTAGAAGCACTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCACTGCAAGCATCTTGCTCAGAGGCAGCTGAACAAAGGAACTGTATTAGCCCTGAAGACATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATTTCTATAG 1113 0.3926 MRTTNLYPFISFSMEEYFLLLKNKTRVKRKTEENRTNMELSQLGFLEELLAPRRDTWNGLSTGMSSELFPSSWSIDSFDESPYLSTFTPSSAAFSTSLDHRFECPYGNDAAYPFVDRFTMPELGSSHTTNHDLEPLLPQEDNPSSMHDEELGFLGNGNLGLEEINDGCKVEEQASEIPVFNMGICGERKTKYKKVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDAIDYIKELLERIGKLQEEEMDEEKNQINHLDISKEQKPNEGMVRNAPKFDVERRDKDTKISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEAAEQRNCISPEDIKQALFRNAGYGGRFL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1104 370 CDD ACT_UUR-ACR-like 296 337 - -
Lal23g1104 370 Pfam Helix-loop-helix DNA-binding domain 203 246 IPR011598 GO:0046983
Lal23g1104 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Lal23g1104 370 PANTHER - 39 369 - -
Lal23g1104 370 Coils Coil 243 264 - -
Lal23g1104 370 SMART finulus 203 252 IPR011598 GO:0046983
Lal23g1104 370 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 39 369 - -
Lal23g1104 370 Gene3D - 189 265 IPR036638 GO:0046983
Lal23g1104 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 256 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1104 Lal-Chr23 12662783 12664654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1104 188 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.760 6.41e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal23g1104 HLH 5.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1104 - - gmx:100806571 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0479 16 2993256 2995021 Lal23g1104 23 12662783 12664654 LSH
Lal15g0419 15 2854006 2856841 Lal23g1104 23 12662783 12664654 LSH