Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1095 ATGGGAAGAGGGAAGATTGTGATTCGAAGGATAGATAATTCTACGAGCAGACAAGTGACTTTCTCAAAGAGGAGAAAGGGATTGTTCAAGAAAGCAAAAGAGTTAGCAATCCTTTGTGATGCAGAAGTTGGACTTGTCATTTTCTCCAACACTGGAAAGCTCTATGAATATGCAAACACAAGCATGAAATCAGTGGTGGAGAGGTATAACACATGCAAGGAGGAACACCAACAACTGATAAATCCAGAATCGGAAGTCAAGAGGGAGGTAGAAATCTTAAGGCAGCAACTACAGATTCTACAAGAAAACCATAGGCAATTGATGGGAGAACAACTTTATGGTTTAAGTGTCAGAAACCTACAAGATCTTGAGAATCAACTGGAAATGAGTCTCCAGGGTGTGCGCATGAAAAAGGAACAAGTTCTAACAGAAGAAATCCAAGAGCTGAACCGAAAGGGAAATCTTATTCATCAGGAAAATGTGGAACTTTATAAGAAAGTTAATATCATTCAACAAGAAAACATGCAATTATGCAAAAAGGTCTATGGCATAACGGATATGGCTGTAAGCAAAAATATTTTCGTTCCGCTTCCATTCGATGTTCACGCAGGACACGATCGACAAGCATTGATCCAACTTCAATTATGCCCGCCTGATCGAGAAACATGTGAGACATCAGGCAGTGGCAGTGCAACAAAATGA 702 0.4003 MGRGKIVIRRIDNSTSRQVTFSKRRKGLFKKAKELAILCDAEVGLVIFSNTGKLYEYANTSMKSVVERYNTCKEEHQQLINPESEVKREVEILRQQLQILQENHRQLMGEQLYGLSVRNLQDLENQLEMSLQGVRMKKEQVLTEEIQELNRKGNLIHQENVELYKKVNIIQQENMQLCKKVYGITDMAVSKNIFVPLPFDVHAGHDRQALIQLQLCPPDRETCETSGSGSATK 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1095 233 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal23g1095 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal23g1095 233 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal23g1095 233 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Lal23g1095 233 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Lal23g1095 233 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lal23g1095 233 Coils Coil 83 110 - -
Lal23g1095 233 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 228 - -
Lal23g1095 233 Coils Coil 120 140 - -
Lal23g1095 233 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal23g1095 233 Pfam K-box region 83 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal23g1095 233 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal23g1095 233 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal23g1095 233 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal23g1095 233 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lal23g1095 233 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1095 Lal-Chr23 12598866 12605840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1095 1 229 MADS-box Gene Family AT2G22630 58.369 1.33e-89 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal23g1095 K-box 7.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1095 K09264 - gmx:100795778 325.094