Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1093 ATGAAGGTGGCAAGTATGATGAGGAAACAGGTTTTGTTCATATGGTGTTTAGGAATGGTAATACAGCTCCACTTTGTGCTTGGTGCCTCGTCATCTAGCATCCTAAAATCCAAATCCAATCATTCTTCGGTCACCGTGAATACAGAGGATAATAAGCAGGTGGTAATTGCCAACAGCATCGTTACCGTGACATTTGCAAACCCCGAAGGCTATATCCTAGGAATATCTTATGCCGGAATTGAGAATGTATTTAATCCTAAACATAAAAGATTTGATAGAGGGTACTTTGATGTTGTTTGGAATGAACCGGGAAAAACAGGTCTCTTTCAAAGAATCGATGGGACAAAATTTTCAATTATAGAACAGAATGAGAACAAGGTGGAGGTTTCATTTTCAAGAACATGGACAACTTCTCTCAGAGGCTCAAATGTCCCCATGAACATAGATAAAAGGTATATAATGCGAAAAGGTGATTCAGGGTTTTATTCATATGTAATATCTGATCGCCCAGCTGGATTTCCTAGAGTAGAGGTTTATCAAATTAGATTTGTTTACAAACTCCACGAAAGAGCTGTAAAAATGGGTGGACCCGTGCGGGCTGGTTCGCCACAACTCGAACTTTTGTTCCAATACATGGCAATATCAGATACTAGGCAAAGGAAAATGCCAACAGCAGGAGATATAAAAACGGGTGAAAAATTGGCTTATCCTGAAGCTGTTCGTATAACTCATTCATCTAATGCAGAATTTAATGGAGAGGTGGATGACAAATACCAATATTCGTGTGAGAACCAAGACAACATTCTTCAAGGTTGGATTACACAAGATTCTAAAGAAACAGTAGGCATTTGGATGATAACACCAAGTAATGAGTTCCGCAATGGTGGACCTGTTCATCAAGATCTCACTTCCCATGTTGGCCCAATTTTACTCAATATGTTTGTGAGTACACACTATGCTGGAAAGAGCCTAGGCATGACATTTAAACAAGGAGAGACACATAAAAAGGTTTATGGACCATTTTTTACATACCTTAACTCTGCTGCAAGTAATGCTAAATTCGATTCTCTGTGGTCAGATGCTGCAAAACAGAAATCCAAAGAAGTCCAAAGTTGGCCTTATGATTTCACTCAGTCAAAGGATTTCGTTCCAGCCAATCAACGGGGTATAGTAGAAGGAGTTTTAAATATCCAAGATAGGTTCATAACTAAAGATGGGTATCAACCAGCTAAGAATGCTTACGTTGGTCTAGCTGTTCCTGGAAATGCAGGATCATGGCAAGAAGAAAGCAAGGGTTACCAATTCTGGACTCGAACTAATGAAAATGGACACTTTGAAATAAAAAATATCGTACCTGGAGAATATAATTTATATGCATGGGTTCCTGGTTTTATTGGTGATTATAAATATGAGACTTCAATCAAAATAGAACCAGGAAGTAAGGTAAAGTTGAATTCGCTCCTATATAGTCCTCCAAGAAATGGTCCTACCCTTTGGGAAATTGGCACCCCAGATCGTTTAGCTGCAGAGTTCTATGTACCAGACCCTTACCCTACGCTCTTGAACAACTTATACAAGAATAGTACAAAAGAAAAATTTAGGGAATACGGTTTGTGGGCACGTTACTCTGACTTATATCCGCATGATGATCTTGTCTTCACTGTTGGAGTTAGTGATTATAGAAAGGATTGGTTTTATGCTCAAGTTACCAGGAAGGTAGAAAACACATACCAACCAACCATATGGCAGATTGTATTTGAACTTCAAAATAGCTTATCTAAAGGAAATTACACACTACAACTGGCTCTAGCATCCGCTAATGGTGCTGAATTGCAGGTTCAGGTCAATAAGACAGATGCTCACACCCCCATCTTCACAACAGGGCTAATTGGTGGCGACAATGCCATAGCAAGGCATGGCATACATGGCTTGTACTGGTTGTTTAGCATACCTATACCGAGCAGTCATTTGGTAAATGGAAAGAACACCATCTATCTTAAGCAAGCAAGAGCTGGAAACCCTTATCCTGGAGTTATGTATGATTATATCCGCTTAGAAAGTCCTGCAACTCACGGTGTTTGA 2082 0.3953 MKVASMMRKQVLFIWCLGMVIQLHFVLGASSSSILKSKSNHSSVTVNTEDNKQVVIANSIVTVTFANPEGYILGISYAGIENVFNPKHKRFDRGYFDVVWNEPGKTGLFQRIDGTKFSIIEQNENKVEVSFSRTWTTSLRGSNVPMNIDKRYIMRKGDSGFYSYVISDRPAGFPRVEVYQIRFVYKLHERAVKMGGPVRAGSPQLELLFQYMAISDTRQRKMPTAGDIKTGEKLAYPEAVRITHSSNAEFNGEVDDKYQYSCENQDNILQGWITQDSKETVGIWMITPSNEFRNGGPVHQDLTSHVGPILLNMFVSTHYAGKSLGMTFKQGETHKKVYGPFFTYLNSAASNAKFDSLWSDAAKQKSKEVQSWPYDFTQSKDFVPANQRGIVEGVLNIQDRFITKDGYQPAKNAYVGLAVPGNAGSWQEESKGYQFWTRTNENGHFEIKNIVPGEYNLYAWVPGFIGDYKYETSIKIEPGSKVKLNSLLYSPPRNGPTLWEIGTPDRLAAEFYVPDPYPTLLNNLYKNSTKEKFREYGLWARYSDLYPHDDLVFTVGVSDYRKDWFYAQVTRKVENTYQPTIWQIVFELQNSLSKGNYTLQLALASANGAELQVQVNKTDAHTPIFTTGLIGGDNAIARHGIHGLYWLFSIPIPSSHLVNGKNTIYLKQARAGNPYPGVMYDYIRLESPATHGV 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1093 693 Gene3D - 37 363 IPR014718 GO:0030246
Lal23g1093 693 CDD RGL4_N 47 348 - -
Lal23g1093 693 SUPERFAMILY Starch-binding domain-like 407 487 IPR013784 GO:0030246
Lal23g1093 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 690 - -
Lal23g1093 693 Pfam Polysaccharide lyase family 4, domain II 411 483 IPR029413 -
Lal23g1093 693 SUPERFAMILY Galactose-binding domain-like 494 686 IPR008979 -
Lal23g1093 693 CDD RGL4_M 387 487 IPR029413 -
Lal23g1093 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 690 - -
Lal23g1093 693 Pfam Polysaccharide lyase family 4, domain III 497 685 IPR029411 -
Lal23g1093 693 Gene3D - 383 486 - -
Lal23g1093 693 Gene3D - 495 686 - -
Lal23g1093 693 CDD RGL4_C 499 686 - -
Lal23g1093 693 Pfam Rhamnogalacturonate lyase family 33 254 IPR010325 -
Lal23g1093 693 SUPERFAMILY Galactose mutarotase-like 48 348 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1093 Lal-Chr23 12575347 12585707 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1093 51 690 Polysaccharide Lyase AT1G09910 50.779 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1093 K18195 - gmx:100781089 859.366