Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1092 ATGAAGGTGGCAAGTATGATGAGGAAACAGGTTTTGTTCATATGGTGTTTAGGAATGGTAATACAGCTCCACTTTGTGCTTGGTGCCTCGTCATCTAGCAACCCAAAATCCGCATTGGATCAATCTACAGTCACCGTGAATACAGAGGATAATAAGCAGGTGGTAATTGCCAACGGCATCGTTACCGTGACGTTTGCAAACCCCGAAGGCTATATCCTAGGAATATCATATGCCGGAATTGAGAATGTGTTTAATCCTAAACTTGAAAGAATTGATAGAGGGTACTTTGATGTTGTTTGGAATGAACCGGGAAAAACAGGTCTCTTTCAGAGAATCGATGGGACAAAATTTTCAATTATAGAACAGAATGAGAACATAGTGGAGGTTTCATTTTCAAGAACATGGACAACTTCTCTAAGAGGCTCAAATGTCCCCATGAACATAGATAAAAGGTATATATTAAGAAAAGGTGATTCAGGGTTTTATTCATATGTAATATCTGACCGTCCAGCCGGATTTCCTAGAGTAGAGATTTATCAAATTAGATTTGTTTACAAGCTTGATGAAAGTTTCCACTACATGGCAATATCAGATACTAGGCAAAGGAACATGCCAACAATAAGAGATATAAAAACGGGTGAGAAATTGGCTTATCCTGAAGCTGTTCGTATAACCCATGCATCTAAGCCAGAATTTATGGGAGAGGTGGATGACAAATACCAATATTCGTGTGAGAACCAAGACAACATTCTTCAAGGTTGGATTACACAAGATTCTAAAGAAACAGTAGGCATTTGGATGATAACACCAAGTAATGAGTTCCGCAATGGTGGACCTGTTCATCAAGATCTCACTTCCCATGTTGGCCCAATTTTACTCAATATGTTTGTGAGCACACATTATGCTGGAAAGAGCCTAGGCATGACATTTGAACAAGGAGAGACACATAAAAAGGTTTATGGACCATTTTATACTTACCTTAACTCTGCTCCAAGTAATGCTAAATTTGATTCTCTGTGGTCAGATGCTACACAACAGAAATCCAAAGAAATCCAAAGTTGGCCTTATGATTTCACACAATCAAAGGATTTCGTTCCAGCCAATCAACGGGGTAGAGTAGAGGGAGTTTTAAATATCCAAGATAGGTTCATAACCAAAGATGGGCCTCAACCTGCTAAGAATGCTTACGTTGGTCTAGCTGTTCCTGGAAATGCAGGATCATGGCAAGAAGAAAGCAAAGGTTACCAATTCTGGACTCGAACCGATGAGAATGGACAGTTTGAAATAAAAAATATCGTACCTGGAGAATATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAAATACGAGACTTCAATCAACATAACACCAGCTATAGGAAATGAAGTCAAGTTGAATTCGCTCATATACAGTCCTCCAAGAAATGGTCCTACCCTTTGGGAAATTGGCACCCCAGATCGTTTAGCTGCAGAATTTTATGTACCAGACCCTTACCCTACGCTCTTGAACAACTTATACAAGAATAATACAAAAGAAAAATTTAGGGAATACGGTTTGTGGGCACGTTACTCTGACTTATATCCGCATGATGATCTTGTCTTCACTGTTGGAGTTAGTGATTATAGAAAGGATTGGTTTTATGCTCAAGTTACCAGGAAGGTAGAAAACACATACCAACCAACCATATGGCAGATTGTATTTGAACTTCAAAATAGCTTATCTAAAGGAAATTACACACTACAACTGGCTCTAGCATCCGCTAATGGTGCTGAATTGCAGGTTCGGGTGAATGAGCCAGATGCTCGTTCCCCCGTCTTCACAACAGGGCTAATTGGTGGTGACAATGCCATAGCAAGGCACGGCATACATGGCTTGTACTGGTTGTTTAGCATACCTATACCTAGCAGTCATTTGGTAAATGGAAAGAACACCATCTATCTGAGACAAGCAAGAGCTGGAAGCCCTTTTCCAGGAGTTATGTATGATTATATCCGCTTAGAAAGTCCTGAAACTCAGGGTGTTTGA 2034 0.3997 MKVASMMRKQVLFIWCLGMVIQLHFVLGASSSSNPKSALDQSTVTVNTEDNKQVVIANGIVTVTFANPEGYILGISYAGIENVFNPKLERIDRGYFDVVWNEPGKTGLFQRIDGTKFSIIEQNENIVEVSFSRTWTTSLRGSNVPMNIDKRYILRKGDSGFYSYVISDRPAGFPRVEIYQIRFVYKLDESFHYMAISDTRQRNMPTIRDIKTGEKLAYPEAVRITHASKPEFMGEVDDKYQYSCENQDNILQGWITQDSKETVGIWMITPSNEFRNGGPVHQDLTSHVGPILLNMFVSTHYAGKSLGMTFEQGETHKKVYGPFYTYLNSAPSNAKFDSLWSDATQQKSKEIQSWPYDFTQSKDFVPANQRGRVEGVLNIQDRFITKDGPQPAKNAYVGLAVPGNAGSWQEESKGYQFWTRTDENGQFEIKNIVPGEYNLYAWVPGFIGDYKYETSINITPAIGNEVKLNSLIYSPPRNGPTLWEIGTPDRLAAEFYVPDPYPTLLNNLYKNNTKEKFREYGLWARYSDLYPHDDLVFTVGVSDYRKDWFYAQVTRKVENTYQPTIWQIVFELQNSLSKGNYTLQLALASANGAELQVRVNEPDARSPVFTTGLIGGDNAIARHGIHGLYWLFSIPIPSSHLVNGKNTIYLRQARAGSPFPGVMYDYIRLESPETQGV 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1092 677 SUPERFAMILY Galactose-binding domain-like 478 670 IPR008979 -
Lal23g1092 677 Gene3D - 479 670 - -
Lal23g1092 677 Pfam Polysaccharide lyase family 4, domain III 481 669 IPR029411 -
Lal23g1092 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 674 - -
Lal23g1092 677 Pfam Polysaccharide lyase family 4, domain II 393 460 IPR029413 -
Lal23g1092 677 CDD RGL4_M 369 471 IPR029413 -
Lal23g1092 677 CDD RGL4_N 47 334 - -
Lal23g1092 677 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 45 674 - -
Lal23g1092 677 SUPERFAMILY Galactose mutarotase-like 48 331 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lal23g1092 677 Gene3D - 365 469 - -
Lal23g1092 677 Pfam Rhamnogalacturonate lyase family 33 236 IPR010325 -
Lal23g1092 677 CDD RGL4_C 483 670 - -
Lal23g1092 677 Gene3D - 43 345 IPR014718 GO:0030246
Lal23g1092 677 SUPERFAMILY Starch-binding domain-like 366 460 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1092 Lal-Chr23 12559834 12567000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1092 52 672 Polysaccharide Lyase AT4G38030 53.651 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1092 K18195 - gmx:100781089 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0482 16 3012810 3028021 Lal23g1092 23 12559834 12567000 LSH
Lal23g1092 23 12559834 12567000 Lal16g1717 16 16147165 16153796 PCT
Lal16g1717 16 16147165 16153796 Lal23g1092 23 12559834 12567000 PCT