Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1083 ATGGCTCATGCTACTACCTCGAACTGGCTATCGTTTTCACTGTCCCCCATGGAAATGCTTAGGTCCACTGAACCTCAGTTCATTCAATACGATGCTGCTTCAGCTCCCTCTCAATACTTTCTTGATAACTATTATGCCAATGGGTGGGGGAACTCTAAGTCTCAGATGCTATGCGGTGTTCAAATGGACCAAAACGACAGCAACAAGGAACAAGCACCGCCAAAAAACATGGCGGAGCTACCGTATTTTGTAAACTTCCCACCGCCACAGGCGGTGCCGAAGCTAGAGAACTTTCTTGGAGATTCTTCCTCAATGATGCGCTACTCCGATAGCCAAACAGAGACTCCAGATTCCTCCCTCACACACGTTTATGACCAAGTTGTTTCCGGTACTTACTTTGGTGTCGGCGAACACCAAGATCTGAAAGCCATTACTGGCTTTCAAGCTTTCTCCACCAACTCGGGCTCCGATGTGGATGACTCAGGTTCCATCGGAAAATCCCAACCCACTTGTGATGAGTTTGGAACTCATTCCATTGAGTCATCCGGTAATAAGTTGGCCTTTTCTGACCGCTGCGGCAATGCCACAGATACTTTTTCTATTGGCATTGCTCAGAAGTCAGAAAAGGCCATAGTTGTGGCCACTTCAGATAGCTCTAAGAAGATTGCTGATACCTTTGGCCAGAGAACTTCAATCTACAGAGGAGTCACTAGACACAGATGGACGGGTAGATATGAAGCGCATCTATGGGATAATAGCTGTAGAAGGGAGGGTCAAGCCAGAAAAGGGCGTCAAGGTGGATATGACAAGGAAGAGAAGGCAGCGAGATCTTATGATTTGGCAGCTCTAAAGTATTGGGGTCCGGCCGCAACCACTAATTTCCCTGTAATGGTTTCCAATTATTCAAAGGAAGTGGAGGAGATGAAACATGTAACAAAACAAGAATTTATTGCATCACTGCGAAGGAAAAGTAGTGGTTTTTCTCGGGGAGCTTCCATATACAGGGGTGTTACAAGGCATCATCAACAGGGTAGATGGCAAGCAAGAATTGGCCGTGTTGCTGGAAACAAAGATCTATACTTGGGAACATTCGCAACTGAAGAGGAAGCAGCAGAGGCATATGATATTGCAGCTATAAAGTTTAGAGGTTCAAATGCTGTAACCAATTTTGAGATGAACAGATATGATGTGGAAGCCATAATGAATAGTTCACTTCCCGTTGGCGGGGCAGCGAAACGCTTGAAGCTTTCCCTAGAAACAGAGCAGAAACAACAATCTCTAGGAAATTCTCATCAGCAGCAACAACCTCACTGTGGAAACATGAATAGCAGCATCAATTTCTCAGCCATTCATCAGCCAAATGCTTCTATCCCGTGTGGAATTCCATCCGATTCATCAACGGCGTATTATCACCACAACCTCTTTCACCATTATCATCATCCTACCAATGCCGGCACACCAGTATCTGGTGTAACTTCTACCAATACATCTGGGTTGAATGCGCTGCCAGCAACAGCGGCACCGGAGTTCTATACATGGCCTCATCAGTCATATTGA 1557 0.4573 MAHATTSNWLSFSLSPMEMLRSTEPQFIQYDAASAPSQYFLDNYYANGWGNSKSQMLCGVQMDQNDSNKEQAPPKNMAELPYFVNFPPPQAVPKLENFLGDSSSMMRYSDSQTETPDSSLTHVYDQVVSGTYFGVGEHQDLKAITGFQAFSTNSGSDVDDSGSIGKSQPTCDEFGTHSIESSGNKLAFSDRCGNATDTFSIGIAQKSEKAIVVATSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARSYDLAALKYWGPAATTNFPVMVSNYSKEVEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGSNAVTNFEMNRYDVEAIMNSSLPVGGAAKRLKLSLETEQKQQSLGNSHQQQQPHCGNMNSSINFSAIHQPNASIPCGIPSDSSTAYYHHNLFHHYHHPTNAGTPVSGVTSTNTSGLNALPATAAPEFYTWPHQSY 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1083 518 SUPERFAMILY DNA-binding domain 231 296 IPR016177 GO:0003677
Lal23g1083 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 513 - -
Lal23g1083 518 SUPERFAMILY DNA-binding domain 332 392 IPR016177 GO:0003677
Lal23g1083 518 Pfam AP2 domain 333 383 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 Pfam AP2 domain 232 287 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 ProSiteProfiles AP2/ERF domain profile. 232 295 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 CDD AP2 231 296 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 CDD AP2 332 391 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 7 513 - -
Lal23g1083 518 SMART rav1_2 232 301 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 SMART rav1_2 333 397 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 PRINTS Ethylene responsive element binding protein signature 373 393 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 ProSiteProfiles AP2/ERF domain profile. 333 391 IPR001471 GO:0003700|GO:0006355
Lal23g1083 518 Gene3D AP2/ERF domain 333 393 IPR036955 GO:0003700|GO:0006355
Lal23g1083 518 Gene3D AP2/ERF domain 232 297 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1083 Lal-Chr23 12498834 12504465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1083 83 518 AP2-EREBP Transcription Factor Family AT5G10510 56.286 6.71e-160 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal23g1083 AP2 1.1e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1083 K09285 - gmx:100777168 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0434 15 2966736 2972045 Lal23g1083 23 12498834 12504465 LSH