Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1080 ATGGCTCTTCCCGGCTCTCTGCAGCTGTCCCATGTACTGGGACTTTGCAATAACCTGGGATACAATAAACACCAGGGGGCAACGGGAAGGGGAAAGATATATTTATTGAGTGCAGGTCCTTTATATCCTGTTTCGGGTTGCTGGAGTTTTCAACACTTCCATCAAATAGGCAGGCCAACACGTACATTATCTTATAAACCTCGCTCTTTTAAGTGCCATTCTTTTCTAGTGCCAGGCCAACCTAGTGAGCTACCTGTTGTTAACGTGGCTGCTACTGTGTTGGCGAGGTCCTATAATGTGCTACAAAGTAGTCCTGTCATTGTAAAGTTGATTCCTGCAGTTGGTATTATCATTTTTGCACTGTGGGGTTTAGGCCCATTTATGTGTCAGACAAGGAAACTGTTTTTTCAGAGGAATGATAATAGTTGGAAGAAGAGTACTACACATTATATAGTAACTTCTTATATTCGGCCATTACTGTTATGGACTGGAGCAATACTTATTTGCAGAGCATTGGAGCCAGCAGTTCTACCTACAGAAACTGGCCAGGTTGTTAAGGAAAGGCTTTTGCACTTTGTAAGATCATTGTCAACTGTACTGGCCTTTGCCTATTGTTTATCAAGTGTGATTCAACAAGCACAGAAATTCTTAATGGATAACACTGATGCAAGTGAGACAAGAAATATGGGATTCCAATTTGCAGGCAAAGCTGTTTATTCTGCAGTATGGGTTGCTGCTTTTTCACTGTTCATGGAATTACTTGGCTTCTCTACCCAGAAATGGGTGACTGCAGGAGGTCTTGGGACAGTTCTGTTGACACTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGCGATGATTCATGCAACTCGGCCTTTTGTTGTCAATGAATGGATTCAAACAAAGATCGAAGGATATGAGGTTTCCGGTACTGTTGAGCATGTTGGTTGGTGGTCACCAACAATTATAAGAGGTGAAGACCGTGAAGCTATCCATATTCCAAACCACAAATTTACAGTTAATGTTGTACGGAACCTCAGCCAGAAAACACATTGGCGGATCAAAACCCACTTAGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAAGTATTATCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCATAGGAGAGTGTTTTTGGAAAACATAAATCCTGAAAATCAGGCTCTTTTGATTCTGGTGTCTTGTTTTGTCAAGACCTCGCATTTTGAAGAATATTTGTGTGTTAAGGAGGCTATACTATTGGATCTTCTTAGAGTTATTGGACATCACCGGGCCCGACTTGCAACACCAATCCGTACCCTGCAGAAAACATACCGAGGTGCTGCTGACTTGGATAACATACCATTTGCAGATTCCACATTCAGTGGTCCTGGAACAGTATCTAACCGGCCATTATTAATGATTGAATCTGCATACAAGATCAATGCAGATGATAAGATGAAAAGTCGATCAGCACGACCAGCTGGTGATCAAGATAACAAAACAACTGTTCGAACCAAACCTGACAGCAAGACAGACACCAAGGTTAATGACCCTGAGGTGGATGCCAAAGTTATGACATATAATTCTGATGCAAATGTAAACTCTAAATCTGCTGGGACACATCCTGAACTGGGAGAAAACAAGCCACTAAAATTGGATTCGAACACTACTCCTTTAAAGGCAAATGTGGGCGTGCCAGAAGAGATGTCCTCGCCTCAGAAAGACAGCAGTGTCAAACAATCTAAGAGTCAGAAAATTAACAATGTCAAGCCAAATCTGGACACTGACAACATAGTTTCCTCGTCGTTAGCAAGCACTGATGACGATAGACTTCCTACGAACATGTCAACAAAACAAGGGGAAAGGAAACCAGTTTCACAGTCTCATGCTTCCAACAGGCCTGTTCTAGAAGAGAATATAGTGCTAGGTGTTGCATTGGATGGATCAAAGAGGACCCTTCCTATTGATGAAGGGATTGACAATGCTGCTACAACTCGAGAGGCAAAGGAAATGGCTGCATGTCAAGGTGGAAATGGATCTTCAAAGGGTACAGATGGAAATGACAAGATTGCAGTTGCTCCAACCTCAAAGTGA 2133 0.4205 MALPGSLQLSHVLGLCNNLGYNKHQGATGRGKIYLLSAGPLYPVSGCWSFQHFHQIGRPTRTLSYKPRSFKCHSFLVPGQPSELPVVNVAATVLARSYNVLQSSPVIVKLIPAVGIIIFALWGLGPFMCQTRKLFFQRNDNSWKKSTTHYIVTSYIRPLLLWTGAILICRALEPAVLPTETGQVVKERLLHFVRSLSTVLAFAYCLSSVIQQAQKFLMDNTDASETRNMGFQFAGKAVYSAVWVAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAIHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLSKNPQVEQQRLHRRVFLENINPENQALLILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPIRTLQKTYRGAADLDNIPFADSTFSGPGTVSNRPLLMIESAYKINADDKMKSRSARPAGDQDNKTTVRTKPDSKTDTKVNDPEVDAKVMTYNSDANVNSKSAGTHPELGENKPLKLDSNTTPLKANVGVPEEMSSPQKDSSVKQSKSQKINNVKPNLDTDNIVSSSLASTDDDRLPTNMSTKQGERKPVSQSHASNRPVLEENIVLGVALDGSKRTLPIDEGIDNAATTREAKEMAACQGGNGSSKGTDGNDKIAVAPTSK 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1080 710 Pfam Mechanosensitive ion channel 236 442 IPR006685 GO:0016020|GO:0055085
Lal23g1080 710 MobiDBLite consensus disorder prediction 683 710 - -
Lal23g1080 710 MobiDBLite consensus disorder prediction 497 532 - -
Lal23g1080 710 MobiDBLite consensus disorder prediction 690 710 - -
Lal23g1080 710 Gene3D - 295 350 IPR023408 -
Lal23g1080 710 Gene3D - 193 293 - -
Lal23g1080 710 SUPERFAMILY Sm-like ribonucleoproteins 279 349 IPR010920 -
Lal23g1080 710 MobiDBLite consensus disorder prediction 497 647 - -
Lal23g1080 710 MobiDBLite consensus disorder prediction 540 554 - -
Lal23g1080 710 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 702 IPR045042 -
Lal23g1080 710 PANTHER MECHANOSENSITIVE ION CHANNEL-LIKE PROTEIN 1 702 - -
Lal23g1080 710 MobiDBLite consensus disorder prediction 582 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1080 Lal-Chr23 12469950 12476278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1080 9 692 Mechanosensitive Ion Channel Family AT5G10490 56.772 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1080 K22047 - gmx:100789444 1032.71